RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA560029" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA560029 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8783367 8783367 PRJNA560029_S_NODE_7407_length_395_cov_3.437888_g7183_i0 PRJNA560029 7407 395 3.437888 13.5796576 root 1 Root_unresolved Root_unresolved 676 0   NTclustered gi|1318779104|gb|CP019600.1| 159 g7183 i0 100 118.298734177215 366 0 93 0 1 366 2037266 2037631 Brachyspira hyodysenteriae strain BH718 chromosome, complete genome blastn 46728 680 0.994117647058824 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Brachyspirales Brachyspiraceae Brachyspira Brachyspira hyodysenteriae
16433108 16433108 PRJNA560029_S_NODE_11473_length_355_cov_1.244681_g11249_i0 PRJNA560029 11473 355 1.244681 4.41861755 root 1 Root_unresolved Root_unresolved 656 0   NTclustered gi|1318779104|gb|CP019600.1| 159 g11249 i0 100 129.816901408451 355 0 100 0 1 355 2037114 2036760 Brachyspira hyodysenteriae strain BH718 chromosome, complete genome blastn 46085 656 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Brachyspirales Brachyspiraceae Brachyspira Brachyspira hyodysenteriae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;