RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA560029" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA560029 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13884261 13884261 PRJNA560029_S_NODE_14791_length_332_cov_2.065637_g14567_i0 PRJNA560029 14791 332 2.065637 6.85791484 Spiroplasma 2132 Bacteria Bacteria 54.7 0.009   NTclustered gi|2802839268|emb|OZ181653.1| 3066280 g14567 i0 100 0.183734939759036 29 0 9 0 186 214 453193 453165 Spiroplasma endosymbiont of Rhagonycha fulva isolate 54749 genome assembly, chromosome: 1 blastn 61 54.7 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma endosymbiont of Rhagonycha fulva
17122014 17122014 PRJNA560029_S_NODE_9874_length_368_cov_3.037288_g9650_i0 PRJNA560029 9874 368 3.037288 11.17721984 Mycoplasma wenyonii 65123 Bacteria Bacteria 425 1.79e-114   NTclustered gi|395455868|gb|CP003703.1| 1197325 g9650 i0 97.233 0.807065217391304 253 3 68 3 1 249 628817 628565 Mycoplasma wenyonii str. Massachusetts, complete genome blastn 297 425 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma wenyonii
24770179 24770179 PRJNA560029_S_NODE_2320_length_562_cov_2.519427_g2099_i0 PRJNA560029 2320 562 2.519427 14.15917974 uncultured Mycoplasmatota bacterium 658143 Bacteria Bacteria 167 1.9e-36   NTclustered gi|2187163482|emb|OV788640.1| 658143 g2099 i0 81.773 149.377224199288 203 34 36 3 10 211 373672 373472 uncultured Tenericutes bacterium isolate min17_bin11 genome assembly, chromosome: 1 blastn 83950 167 1 Bacteria   Bacillati Mycoplasmatota         uncultured Mycoplasmatota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;