RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA560029" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA560029 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
543875 543875 PRJNA560029_S_NODE_23481_length_286_cov_3.023474_g23257_i0 PRJNA560029 23481 286 3.023474 8.64713564 Octopus bimaculoides 37653 Mollusca Mollusca 52.8 0.026   NTclustered gi|2427275130|ref|XM_014912321.2| 37653 g23257 i0 100 0.0979020979020979 28 0 10 0 209 236 5348 5321 PREDICTED: Octopus bimaculoides ATP-dependent RNA helicase TDRD9 (LOC106867444), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Cephalopoda Octopoda Octopodidae Octopus Octopus bimaculoides
4371205 4371205 PRJNA560029_S_NODE_17984_length_313_cov_2.362500_g17760_i0 PRJNA560029 17984 313 2.3625 7.394625 Mya arenaria 6604 Mollusca Mollusca 54.7 0.008   NTclustered gi|2427467042|ref|XM_052939866.1| 6604 g17760 i0 100 0.185303514376997 29 0 9 0 254 282 938 966 PREDICTED: Mya arenaria cell division control protein 42 homolog (LOC128228518), transcript variant X1, mRNA blastn 58 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Myida Myidae Mya Mya arenaria
5647835 5647835 PRJNA560029_S_NODE_26505_length_273_cov_1.475000_g26281_i0 PRJNA560029 26505 273 1.475 4.02675 Bradybaena similaris 145626 Mollusca Mollusca 52.8 0.025   NTclustered gi|2912995509|dbj|AP039600.1| 145626 g26281 i0 100 0.102564102564103 28 0 10 0 105 132 24948674 24948701 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 19, sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
10748300 10748300 PRJNA560029_S_NODE_25909_length_275_cov_3.321782_g25685_i0 PRJNA560029 25909 275 3.321782 9.1349005 Magallana angulata 2784310 Mollusca Mollusca 60.2 1.51e-4   NTclustered gi|2416968255|ref|XM_052823477.1| 2784310 g25685 i0 100 1.17090909090909 32 0 12 0 45 76 1134 1103 PREDICTED: Crassostrea angulata mucin-5AC-like (LOC128160194), transcript variant X2, mRNA blastn 322 60.2 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Magallana Magallana angulata
13884260 13884260 PRJNA560029_S_NODE_14631_length_333_cov_2.396154_g14407_i0 PRJNA560029 14631 333 2.396154 7.97919282 Metazoa 33208 Mollusca Mollusca 52.8 0.031   NTclustered gi|2427390617|ref|XM_052917999.1| 6604 g14407 i0 100 1.62462462462462 28 0 8 0 231 258 5153 5126 PREDICTED: Mya arenaria protein mono-ADP-ribosyltransferase PARP14-like (LOC128212513), mRNA blastn 541 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Myida Myidae Mya Mya arenaria
14572582 14572582 PRJNA560029_S_NODE_10572_length_362_cov_2.826990_g10348_i0 PRJNA560029 10572 362 2.82699 10.2337038 Bradybaena similaris 145626 Mollusca Mollusca 52.8 0.034   NTclustered gi|2912987826|dbj|AP039592.1| 145626 g10348 i0 100 0.0773480662983425 28 0 8 0 211 238 32337202 32337175 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 11, sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
24770489 24770489 PRJNA560029_S_NODE_37880_length_203_cov_7.169231_g37656_i0 PRJNA560029 37880 203 7.169231 14.55353893 Idiosepius paradoxus 294707 Mollusca Mollusca 56.5 0.001   NTclustered gi|325504932|dbj|AB586703.1| 294707 g37656 i0 94.595 1.16748768472906 37 1 18 1 1 36 8 44 Idiosepius paradoxus cenG mRNA for centaurin gamma homolog, complete cds blastn 237 56.5 1 Eukaryota Opisthokonta Metazoa Mollusca Cephalopoda   Idiosepiidae Idiosepius Idiosepius paradoxus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;