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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA560029" and tax_clade = "Sar"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA560029 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3094626 3094626 PRJNA560029_S_NODE_11343_length_356_cov_1.787986_g11119_i0 PRJNA560029 11343 356 1.787986 6.36523016 Hematodinium sp. 173654 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.034   NTclustered gi|357196844|emb|HE610736.1| 173654 g11119 i0 100 0.0786516853932584 28 0 8 0 329 356 29 2 Hematodinium sp. mitochondrial partial small subunit ribosomal RNA (ssu rRNA gene), clone 16 blastn 28 52.8 1 Eukaryota Sar     Dinophyceae Syndiniales Syndiniaceae Hematodinium Hematodinium sp.
4371558 4371558 PRJNA560029_S_NODE_3344_length_493_cov_2.295238_g3122_i0 PRJNA560029 3344 493 2.295238 11.31552334 uncultured marine diatom 285226 SAR_Eukaryotes SAR_Eukaryotes 58.4 0.001   NTclustered gi|223047888|gb|FJ032658.1| 285226 g3122 i0 100 1.33874239350913 31 0 6 0 35 65 1591 1621 Uncultured marine diatom clone DH22_2A36 28S ribosomal RNA gene, partial sequence blastn 660 58.4 1 Eukaryota Sar   Bacillariophyta         uncultured marine diatom
10748056 10748056 PRJNA560029_S_NODE_14769_length_332_cov_2.837838_g14545_i0 PRJNA560029 14769 332 2.837838 9.42162216 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.031   NTclustered gi|820693004|tpe|LN714485.1| 572307 g14545 i0 100 0.168674698795181 28 0 8 0 202 229 5186453 5186426 TPA_asm: Neospora caninum Liverpool, chromosome chrX, complete genome blastn 56 52.8 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
12023010 12023010 PRJNA560029_S_NODE_23970_length_284_cov_2.232227_g23746_i0 PRJNA560029 23970 284 2.232227 6.33952468 Plasmodium sp. gorilla clade G2 880535 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.002   NTclustered gi|1620167712|ref|XM_028681606.1| 880535 g23746 i0 94.595 0.130281690140845 37 1 13 1 223 258 14964 15000 Plasmodium sp. gorilla clade G2 E3 ubiquitin-protein ligase, putative (PADL01_0825300), partial mRNA blastn 37 56.5 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium sp. gorilla clade G2
15158481 15158481 PRJNA560029_S_NODE_38052_length_196_cov_65.512195_g37828_i0 PRJNA560029 38052 196 65.512195 128.4039022 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 351 1.49e-92   NTclustered gi|27764590|gb|AY180902.1| 5821 g37828 i0 98.98 99.8979591836735 196 2 100 0 1 196 917 722 Plasmodium berghei 31 kDa antigen mRNA, complete cds blastn 19580 351 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium berghei
18396169 18396169 PRJNA560029_S_NODE_8515_length_381_cov_5.542208_g8291_i0 PRJNA560029 8515 381 5.542208 21.11581248 Cyclospora cayetanensis 88456 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.036   NTclustered gi|1472911924|ref|XM_022736577.2| 88456 g8291 i0 100 0.073490813648294 28 0 7 0 269 296 805 778 PREDICTED: Cyclospora cayetanensis lissencephaly-1 homolog (LOC34623454), mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Cyclospora Cyclospora cayetanensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;