RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA560029" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA560029 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8197137 8197137 PRJNA560029_S_NODE_4427_length_451_cov_35.428571_g4203_i0 PRJNA560029 4427 451 35.428571 159.78285521 Iodamoeba sp. RL1 1089794 Evosea other_Eukaryota 315 5.05e-81   NTclustered gi|347976700|gb|JN635745.1| 1089794 g4203 i0 87.455 48.3259423503326 279 28 61 4 118 390 1752 1475 Iodamoeba sp. RL1 isolate EM081 clone 6 small subunit ribosomal RNA gene, partial sequence blastn 21795 315 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Iodamoeba Iodamoeba sp. RL1
10748424 10748424 PRJNA560029_S_NODE_31569_length_252_cov_5.782123_g31345_i0 PRJNA560029 31569 252 5.782123 14.57094996 Endolimax carassius 2949625 Evosea other_Eukaryota 220 5.919999999999999e-53   NTclustered gi|2247024974|gb|ON646298.1| 2949625 g31345 i0 82.772 27.25 267 27 99 10 4 252 1197 932 Endolimax carassius isolate BCN_1 small subunit ribosomal RNA gene, partial sequence blastn 6867 220 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Endolimax Endolimax carassius
19670220 19670220 PRJNA560029_S_NODE_15436_length_327_cov_11.078740_g15212_i0 PRJNA560029 15436 327 11.07874 36.2274798 Endolimax piscium 1284676 Evosea other_Eukaryota 174 6.29e-39   NTclustered gi|443299289|gb|JX101954.1| 1284676 g15212 i0 94.69 26.5290519877676 113 5 53 1 1 112 2232 2344 Endolimax piscium clone PM1 18S ribosomal RNA gene, partial sequence blastn 8675 174 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Endolimax Endolimax piscium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;