RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA559720" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA559720 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10747935 10747935 PRJNA559720_P_NODE_7469_length_370_cov_1.713805_g7330_i0 PRJNA559720 7469 370 1.713805 6.3410785 Strongyloides ratti 34506 Nematoda Nematoda 193 1.99e-44   NTclustered gi|1376147069|ref|XM_024654161.1| 34506 g7330 i0 79.298 6.09189189189189 285 51 76 8 90 370 872 1152 Strongyloides ratti Adaptor protein complex 1/2, beta subunit (SRAE_2000301800), partial mRNA blastn 2254 193 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
23495999 23495999 PRJNA559720_P_NODE_839_length_987_cov_3.291028_g776_i0 PRJNA559720 839 987 3.291028 32.48244636 Brugia malayi 6279 Nematoda Nematoda 67.6 3.57e-6   NTclustered gi|2082291249|ref|XM_043073343.1| 6279 g776 i0 97.436 0.0395136778115502 39 1 4 0 598 636 617 655 Brugia malayi Guanine nucleotide-binding protein alpha-12 subunit, putative (Bma-gpa-12), partial mRNA blastn 39 67.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia malayi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;