RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA559720" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA559720 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8783288 8783288 PRJNA559720_P_NODE_7887_length_358_cov_10.449123_g7748_i0 PRJNA559720 7887 358 10.449123 37.40786034 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 603 7.459999999999999e-168   NTclustered gi|134022080|gb|EF023430.1| 404735 g7748 i0 97.199 99.7765363128492 357 9 99 1 1 357 9 364 Eimeriidae environmental sample clone Amb_18S_1004 18S ribosomal RNA gene, partial sequence blastn 35720 608 0.991776315789474 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae   uncultured Eimeriidae
17121206 17121206 PRJNA559720_P_NODE_13674_length_251_cov_0.865169_g13535_i0 PRJNA559720 13674 251 0.865169 2.17157419 Eimeria necatrix 51315 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.006   NTclustered gi|921119293|ref|XM_013578812.1| 51315 g13535 i0 100 0.115537848605578 29 0 12 0 157 185 165 137 Eimeria necatrix hypothetical protein, conserved partial mRNA blastn 29 54.7 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria necatrix
20945670 20945670 PRJNA559720_P_NODE_11457_length_282_cov_1.775120_g11318_i0 PRJNA559720 11457 282 1.77512 5.0058384 Cryptosporidium parvum 5807 SAR_Eukaryotes SAR_Eukaryotes 62.1 4.32e-5   NTclustered gi|66356947|ref|XM_625652.1| 353152 g11318 i0 100 0.117021276595745 33 0 12 0 77 109 6248 6280 Cryptosporidium parvum Iowa II very large low complexity protein (cgd4_450) partial mRNA blastn 33 62.1 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium parvum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;