RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA559720" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 2 ✖

bioproject 1

  • PRJNA559720 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8196418 8196418 PRJNA559720_P_NODE_12167_length_271_cov_1.343434_g12028_i0 PRJNA559720 12167 271 1.343434 3.64070614 Deinococcus sp. NW-56 2080419 Bacteria Bacteria 54.7 0.007   NTclustered gi|1339790003|gb|CP026516.1| 2080419 g12028 i0 94.444 0.132841328413284 36 1 13 1 183 217 1922193 1922228 Deinococcus sp. NW-56 chromosome, complete genome blastn 36 54.7 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. NW-56
15158411 15158411 PRJNA559720_P_NODE_14652_length_247_cov_0.885057_g14513_i0 PRJNA559720 14652 247 0.885057 2.18609079 Deinococcus 1298 Bacteria Bacteria 457 4.05e-124   NTclustered gi|1435318985|gb|CP031160.1| 980427 g14513 i0 100 6.00404858299595 247 0 100 0 1 247 16151 16397 Deinococcus wulumuqiensis strain NEB 479 plasmid pDrdB, complete sequence blastn 1483 457 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus wulumuqiensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;