RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA559720" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA559720 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1819197 1819197 PRJNA559720_P_NODE_14702_length_247_cov_0.885057_g14563_i0 PRJNA559720 14702 247 0.885057 2.18609079 Echinostelium bisporum 1973072 Evosea other_Eukaryota 383 6.97e-102   NTclustered gi|1465309735|gb|MH809395.1| 1973072 g14563 i0 95.455 52.2307692307692 242 7 98 3 1 242 1305 1542 Echinostelium bisporum isolate Nx14-A1 small subunit ribosomal RNA gene, partial sequence blastn 12901 383 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Echinosteliales Echinosteliidae Echinostelium Echinostelium bisporum
22807498 22807498 PRJNA559720_P_NODE_10218_length_304_cov_0.909091_g10079_i0 PRJNA559720 10218 304 0.909091 2.76363664 Entamoeba 5758 Evosea other_Eukaryota 147 1.26e-30   NTclustered gi|54401028|gb|AY641405.1| 5759 g10079 i0 77.778 2.34210526315789 252 46 81 8 58 304 869 623 Entamoeba histolytica vacuolar ATPase subunit B gene, complete cds blastn 712 147 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;