RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA558770" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA558770 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3681120 3681120 PRJNA558770_P_NODE_378343_length_224_cov_5.910053_g376338_i0 PRJNA558770 378343 224 5.910053 13.23851872 Rotaria 231623 Rotifera other_Eukaryota 407 3.69e-109   NTclustered gi|2537903863|gb|KF561105.2| 392034 g376338 i0 99.552 99.5714285714286 223 1 99 0 1 223 757 535 Rotaria tardigrada isolate A535_RT1 18S ribosomal RNA gene, partial sequence blastn 22304 407 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria tardigrada
11333063 11333063 PRJNA558770_P_NODE_391629_length_171_cov_3.147059_g389624_i0 PRJNA558770 391629 171 3.147059 5.38147089 Eurotatoria 2816136 Rotifera other_Eukaryota 305 9.96e-79   NTclustered gi|2537903787|gb|KM043252.2| 104782 g389624 i0 98.83 92.2456140350877 171 2 100 0 1 171 218 48 Adineta vaga voucher AD005 18S ribosomal RNA gene, partial sequence blastn 15774 305 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
24081833 24081833 PRJNA558770_P_NODE_395359_length_159_cov_2.766129_g393354_i0 PRJNA558770 395359 159 2.766129 4.39814511 Brachionidae 10193 Rotifera other_Eukaryota 158 2.71e-34   NTclustered gi|308156997|gb|GQ890462.1| 204742 g393354 i0 85.161 22.0754716981132 155 21 97 2 1 155 618 466 Keratella quadrata isolate DNA198 large subunit ribosomal RNA gene, partial sequence blastn 3510 158 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Keratella Keratella quadrata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;