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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA558770" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 10 ✖

tax_clade 1

bioproject 1

  • PRJNA558770 · 10 ✖

analysis 1

  • blastn · 10 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
538807 538807 PRJNA558770_P_NODE_184141_length_234_cov_4.447236_g182136_i0 PRJNA558770 184141 234 4.447236 10.40653224 Pseudoperonospora cubensis 143453 SAR_Eukaryotes SAR_Eukaryotes 97.1 9.55e-16   NTclustered gi|2250226911|gb|MW582838.1| 143453 g182136 i0 96.552 5.35470085470085 58 2 25 0 1 58 47 104 Pseudoperonospora cubensis microsatellite PC14 sequence blastn 1253 97.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Pseudoperonospora Pseudoperonospora cubensis
5642193 5642193 PRJNA558770_P_NODE_160825_length_234_cov_5.708543_g158820_i0 PRJNA558770 160825 234 5.708543 13.35799062 Peronospora belbahrii 622444 SAR_Eukaryotes SAR_Eukaryotes 141 4.35e-29   NTclustered gi|1235732003|gb|MF693906.1| 622444 g158820 i0 100 45.5726495726496 76 0 65 0 159 234 108 33 Peronospora belbahrii isolate RC16DM5 large subunit ribosomal RNA gene, partial sequence blastn 10664 141 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora belbahrii
7507350 7507350 PRJNA558770_P_NODE_250506_length_234_cov_2.296482_g248501_i0 PRJNA558770 250506 234 2.296482 5.37376788 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 130 9.41e-26   NTclustered gi|1820797599|gb|MT192342.1| 4798 g248501 i0 98.63 37.9786324786325 73 1 31 0 4 76 334 406 Pythium hydnosporum isolate JZB3410001 large subunit ribosomal RNA gene, partial sequence blastn 8887 130 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium hydnosporum
10058174 10058174 PRJNA558770_P_NODE_314668_length_233_cov_10.565657_g312663_i0 PRJNA558770 314668 233 10.565657 24.61798081 Albugo 65356 SAR_Eukaryotes SAR_Eukaryotes 108 4.39e-19   NTclustered gi|325183168|emb|FR824083.1| 890382 g312663 i0 96.875 1.6480686695279 64 2 27 0 170 233 35882 35819 Albugo laibachii Nc14, genomic contig CONTIG_38_NC14_v4_136441_241 blastn 384 108 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
11332171 11332171 PRJNA558770_P_NODE_196969_length_234_cov_3.899497_g194964_i0 PRJNA558770 196969 234 3.899497 9.12482298 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 110 1.23e-19   NTclustered gi|2795034905|ref|XM_067944651.1| 4785 g194964 i0 93.243 17.6965811965812 74 5 32 0 161 234 3740 3813 Phytophthora cinnamomi Gag-Pol polyprotein (IUM83_19595), partial mRNA blastn 4141 111 0.990990990990991 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
16431786 16431786 PRJNA558770_P_NODE_209673_length_234_cov_3.427136_g207668_i0 PRJNA558770 209673 234 3.427136 8.01949824 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 128 3.38e-25   NTclustered gi|2260101629|gb|ON860620.1| 135482 g207668 i0 98.611 30.7564102564103 72 1 31 0 4 75 799 870 Myzocytiopsis humana voucher CCIBt4304 large subunit ribosomal RNA gene, partial sequence blastn 7197 128 1 Eukaryota Sar   Oomycota   Myzocytiopsidales Myzocytiopsidaceae Myzocytiopsis Myzocytiopsis humana
19667791 19667791 PRJNA558770_P_NODE_361236_length_232_cov_6.329949_g359231_i0 PRJNA558770 361236 232 6.329949 14.68548168 Peronospora belbahrii 622444 SAR_Eukaryotes SAR_Eukaryotes 117 7.25e-22   NTclustered gi|2248512836|ref|NC_063790.1| 622444 g359231 i0 94.667 0.323275862068966 75 4 32 0 1 75 4568 4642 Peronospora belbahrii isolate HI01 mitochondrion, complete genome blastn 75 117 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora belbahrii
20255450 20255450 PRJNA558770_P_NODE_174536_length_234_cov_4.919598_g172531_i0 PRJNA558770 174536 234 4.919598 11.51185932 Peronospora 70742 SAR_Eukaryotes SAR_Eukaryotes 141 4.35e-29   NTclustered gi|122703753|gb|EF153666.1| 417820 g172531 i0 100 59.3376068376068 76 0 65 0 1 76 24 99 Peronospora sp. S4 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 13885 141 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora sp. S4
21531735 21531735 PRJNA558770_P_NODE_332977_length_233_cov_5.484848_g330972_i0 PRJNA558770 332977 233 5.484848 12.77969584 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 84.2 7.39e-12   NTclustered gi|73917512|gb|DQ163008.1| 129354 g330972 i0 91.667 0.570815450643777 60 5 26 0 1 60 142 83 Phytophthora katsurae strain SCRP388 intergenic spacer region 2, partial sequence blastn 133 84.2 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora katsurae
24766020 24766020 PRJNA558770_P_NODE_235600_length_234_cov_2.653266_g233595_i0 PRJNA558770 235600 234 2.653266 6.20864244 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 87.9 5.74e-13   NTclustered gi|2795036851|ref|XM_067927300.1| 4785 g233595 i0 94.643 0.239316239316239 56 3 24 0 20 75 1788 1843 Phytophthora cinnamomi phosphatidylinositol kinase (IUM83_03309), partial mRNA blastn 56 87.9 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;