RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA558770" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA558770 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1815193 1815193 PRJNA558770_P_NODE_219762_length_234_cov_3.100503_g217757_i0 PRJNA558770 219762 234 3.100503 7.25517702 uncultured Mycoplasmatota bacterium 658143 Bacteria Bacteria 117 7.33e-22   NTclustered gi|2187152065|emb|OV788643.1| 658143 g217757 i0 95.89 1.85470085470085 73 1 30 1 5 75 933332 933260 uncultured Tenericutes bacterium isolate min17_bin32 genome assembly, chromosome: 1 blastn 434 117 1 Bacteria   Bacillati Mycoplasmatota         uncultured Mycoplasmatota bacterium
1816770 1816770 PRJNA558770_P_NODE_328002_length_233_cov_6.737374_g325997_i0 PRJNA558770 328002 233 6.737374 15.69808142 Acholeplasmataceae bacterium 1898209 Bacteria Bacteria 87.9 5.72e-13   NTclustered gi|2621717558|emb|OY775910.1| 1898209 g325997 i0 87.838 3.55364806866953 74 9 32 0 160 233 771429 771356 MAG: Acholeplasmataceae bacterium isolate 79d77305-d387-4e48-9b67-53dfc1ec32a7 genome assembly, chromosome: 1 blastn 828 87.9 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium
3089933 3089933 PRJNA558770_P_NODE_191563_length_234_cov_4.120603_g189558_i0 PRJNA558770 191563 234 4.120603 9.64221102 Spiroplasma endosymbiont of Rhagonycha fulva 3066280 Bacteria Bacteria 56.5 0.002   NTclustered gi|2802839268|emb|OZ181653.1| 3066280 g189558 i0 96.97 0.141025641025641 33 1 14 0 161 193 633807 633839 Spiroplasma endosymbiont of Rhagonycha fulva isolate 54749 genome assembly, chromosome: 1 blastn 33 56.5 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma endosymbiont of Rhagonycha fulva
4957981 4957981 PRJNA558770_P_NODE_393784_length_164_cov_1.961240_g391779_i0 PRJNA558770 393784 164 1.96124 3.2164336 Mollicutes 31969 Bacteria Bacteria 303 3.42e-78   NTclustered gi|1958638505|gb|MW498314.1| 2100 g391779 i0 100 123.256097560976 164 0 100 0 1 164 1294 1131 Mesomycoplasma hyorhinis strain MycSu128 23S ribosomal RNA gene, partial sequence blastn 20214 303 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
5644443 5644443 PRJNA558770_P_NODE_290525_length_234_cov_1.557789_g288520_i0 PRJNA558770 290525 234 1.557789 3.64522626 Metamycoplasma salivarium 2124 Bacteria Bacteria 139 1.56e-28   NTclustered gi|1563679190|emb|LR214939.1| 2124 g288520 i0 100 1.24786324786325 75 0 62 0 1 75 156909 156983 Mycoplasma salivarium strain NCTC10113 genome assembly, plasmid: 2 blastn 292 139 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma salivarium
8192600 8192600 PRJNA558770_P_NODE_231067_length_234_cov_2.773869_g229062_i0 PRJNA558770 231067 234 2.773869 6.49085346 Mycoplasma bradburyae 2963128 Bacteria Bacteria 54.7 0.006   NTclustered gi|2274227125|gb|CP101414.1| 2963128 g229062 i0 83.051 0.252136752136752 59 10 25 0 5 63 908452 908394 Mycoplasma bradburyae strain T158 chromosome, complete genome blastn 59 54.7 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma bradburyae
22215894 22215894 PRJNA558770_P_NODE_178458_length_234_cov_4.718593_g176453_i0 PRJNA558770 178458 234 4.718593 11.04150762 Metamycoplasma canadense 29554 Bacteria Bacteria 52.8 0.021   NTclustered gi|675242197|dbj|AP014631.1| 29554 g176453 i0 100 0.363247863247863 28 0 12 0 168 195 439889 439916 Mycoplasma canadense DNA, complete genome, strain: HAZ360_1 blastn 85 52.8 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma canadense

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;