contig_metadata
17 rows where analysis = "blastn", bioproject = "PRJNA558770" and tax_phylum = "Gemmatimonadota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 540509 | 540509 | PRJNA558770_P_NODE_283921_length_234_cov_1.673367_g281916_i0 | PRJNA558770 | 283921 | 234 | 1.673367 | 3.91567878 | Gemmatimonadota bacterium | 2026742 | Bacteria | Bacteria | 76.8 | 1.24e-9 | NTclustered | gi|2108172456|gb|CP070716.1| | 2026742 | g281916 | i0 | 86.765 | 0.290598290598291 | 68 | 9 | 29 | 0 | 5 | 72 | 2068512 | 2068579 | MAG: Gemmatimonadetes bacterium isolate bin486 chromosome | blastn | 68 | 76.8 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadota bacterium | |||||
| 3091203 | 3091203 | PRJNA558770_P_NODE_265243_length_234_cov_1.994975_g263238_i0 | PRJNA558770 | 265243 | 234 | 1.994975 | 4.6682415 | uncultured Gemmatimonadales bacterium | 412054 | Bacteria | Bacteria | 89.8 | 1.6e-13 | NTclustered | gi|2874253978|emb|OY970303.1| | 412054 | g263238 | i0 | 89.855 | 17.4358974358974 | 69 | 7 | 29 | 0 | 160 | 228 | 3084525 | 3084593 | MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 | blastn | 4080 | 89.8 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | uncultured Gemmatimonadales bacterium | |||
| 4367132 | 4367132 | PRJNA558770_P_NODE_236544_length_234_cov_2.628141_g234539_i0 | PRJNA558770 | 236544 | 234 | 2.628141 | 6.14984994 | uncultured Gemmatimonadales bacterium | 412054 | Bacteria | Bacteria | 80.5 | 9.61e-11 | NTclustered | gi|2874253728|emb|OY969570.1| | 412054 | g234539 | i0 | 91.379 | 0.247863247863248 | 58 | 5 | 25 | 0 | 3 | 60 | 3438833 | 3438890 | MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 | blastn | 58 | 80.5 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | uncultured Gemmatimonadales bacterium | |||
| 5643622 | 5643622 | PRJNA558770_P_NODE_236905_length_234_cov_2.618090_g234900_i0 | PRJNA558770 | 236905 | 234 | 2.61809 | 6.1263306 | uncultured Gemmatimonadales bacterium | 412054 | Bacteria | Bacteria | 126 | 1.22e-24 | NTclustered | gi|2874253728|emb|OY969570.1| | 412054 | g234900 | i0 | 97.297 | 0.551282051282051 | 74 | 2 | 55 | 0 | 2 | 75 | 1769317 | 1769390 | MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 | blastn | 129 | 126 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | uncultured Gemmatimonadales bacterium | |||
| 9468439 | 9468439 | PRJNA558770_P_NODE_238088_length_234_cov_2.587940_g236083_i0 | PRJNA558770 | 238088 | 234 | 2.58794 | 6.0557796 | uncultured Gemmatimonadales bacterium | 412054 | Bacteria | Bacteria | 71.3 | 5.79e-8 | NTclustered | gi|2874253728|emb|OY969570.1| | 412054 | g236083 | i0 | 88.525 | 6.51282051282051 | 61 | 4 | 28 | 3 | 161 | 218 | 178538 | 178598 | MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 | blastn | 1524 | 71.3 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | uncultured Gemmatimonadales bacterium | |||
| 10744188 | 10744188 | PRJNA558770_P_NODE_244689_length_234_cov_2.427136_g242684_i0 | PRJNA558770 | 244689 | 234 | 2.427136 | 5.67949824 | Longimicrobiales bacterium | 2910168 | Bacteria | Bacteria | 97.1 | 9.55e-16 | NTclustered | gi|2893358411|emb|OZ220702.1| | 2910168 | g242684 | i0 | 92.537 | 7.16239316239316 | 67 | 5 | 29 | 0 | 168 | 234 | 1375129 | 1375063 | MAG: Longimicrobiales bacterium isolate 5c038fdb-8e0b-4cbd-9550-43be1afc0bbf genome assembly, chromosome: 1 | blastn | 1676 | 97.1 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Longimicrobiia | Longimicrobiales | Longimicrobiales bacterium | |||
| 15841642 | 15841642 | PRJNA558770_P_NODE_182333_length_234_cov_4.532663_g180328_i0 | PRJNA558770 | 182333 | 234 | 4.532663 | 10.60643142 | Gemmatirosa kalamazoonensis | 861299 | Bacteria | Bacteria | 102 | 2.05e-17 | NTclustered | gi|575461033|gb|CP007129.1| | 861299 | g180328 | i0 | 90.789 | 0.324786324786325 | 76 | 7 | 32 | 0 | 1 | 76 | 809790 | 809715 | Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence | blastn | 76 | 102 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatirosa | Gemmatirosa kalamazoonensis | |
| 19666560 | 19666560 | PRJNA558770_P_NODE_256176_length_234_cov_2.175879_g254171_i0 | PRJNA558770 | 256176 | 234 | 2.175879 | 5.09155686 | uncultured Gemmatimonadales bacterium | 412054 | Bacteria | Bacteria | 122 | 1.5699999999999994e-23 | NTclustered | gi|2874253728|emb|OY969570.1| | 412054 | g254171 | i0 | 96 | 1.17948717948718 | 75 | 3 | 32 | 0 | 1 | 75 | 4387538 | 4387464 | MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 | blastn | 276 | 122 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | uncultured Gemmatimonadales bacterium | |||
| 19667980 | 19667980 | PRJNA558770_P_NODE_382896_length_205_cov_4.300000_g380891_i0 | PRJNA558770 | 382896 | 205 | 4.3 | 8.815 | uncultured Gemmatimonadales bacterium | 412054 | Bacteria | Bacteria | 69.4 | 1.78e-7 | NTclustered | gi|2874253978|emb|OY970303.1| | 412054 | g380891 | i0 | 91.837 | 0.239024390243902 | 49 | 4 | 24 | 0 | 11 | 59 | 8210608 | 8210656 | MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 | blastn | 49 | 69.4 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | uncultured Gemmatimonadales bacterium | |||
| 20941462 | 20941462 | PRJNA558770_P_NODE_209437_length_234_cov_3.432161_g207432_i0 | PRJNA558770 | 209437 | 234 | 3.432161 | 8.03125674 | uncultured Gemmatimonadales bacterium | 412054 | Bacteria | Bacteria | 110 | 1.23e-19 | NTclustered | gi|2874253728|emb|OY969570.1| | 412054 | g207432 | i0 | 94.366 | 6.66239316239316 | 71 | 4 | 30 | 0 | 3 | 73 | 3678467 | 3678537 | MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 | blastn | 1559 | 110 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | uncultured Gemmatimonadales bacterium | |||
| 20942781 | 20942781 | PRJNA558770_P_NODE_290977_length_234_cov_1.547739_g288972_i0 | PRJNA558770 | 290977 | 234 | 1.547739 | 3.62170926 | uncultured Gemmatimonadales bacterium | 412054 | Bacteria | Bacteria | 119 | 2.04e-22 | NTclustered | gi|2874253728|emb|OY969570.1| | 412054 | g288972 | i0 | 94.737 | 0.324786324786325 | 76 | 4 | 32 | 0 | 159 | 234 | 127709 | 127784 | MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 | blastn | 76 | 119 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | uncultured Gemmatimonadales bacterium | |||
| 20943409 | 20943409 | PRJNA558770_P_NODE_347317_length_233_cov_1.883838_g345312_i0 | PRJNA558770 | 347317 | 233 | 1.883838 | 4.38934254 | uncultured Gemmatimonadales bacterium | 412054 | Bacteria | Bacteria | 124 | 4.36e-24 | NTclustered | gi|2874253728|emb|OY969570.1| | 412054 | g345312 | i0 | 97.26 | 0.690987124463519 | 73 | 2 | 31 | 0 | 3 | 75 | 4190443 | 4190515 | MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 | blastn | 161 | 124 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | uncultured Gemmatimonadales bacterium | |||
| 22215950 | 22215950 | PRJNA558770_P_NODE_181238_length_234_cov_4.587940_g179233_i0 | PRJNA558770 | 181238 | 234 | 4.58794 | 10.7357796 | Gemmatimonas phototrophica | 1379270 | Bacteria | Bacteria | 52.8 | 0.021 | NTclustered | gi|1015602748|gb|CP011454.1| | 1379270 | g179233 | i0 | 100 | 0.11965811965812 | 28 | 0 | 12 | 0 | 16 | 43 | 2703496 | 2703469 | Gemmatimonas phototrophica strain AP64, complete genome | blastn | 28 | 52.8 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatimonas | Gemmatimonas phototrophica | |
| 24080491 | 24080491 | PRJNA558770_P_NODE_116539_length_234_cov_9.653266_g114534_i0 | PRJNA558770 | 116539 | 234 | 9.653266 | 22.58864244 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 104 | 5.7e-18 | NTclustered | gi|2874253978|emb|OY970303.1| | 412054 | g114534 | i0 | 92 | 1.93162393162393 | 75 | 4 | 32 | 2 | 2 | 75 | 126396 | 126323 | MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 | blastn | 452 | 104 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | uncultured Gemmatimonadales bacterium | |||
| 24765595 | 24765595 | PRJNA558770_P_NODE_209620_length_234_cov_3.427136_g207615_i0 | PRJNA558770 | 209620 | 234 | 3.427136 | 8.01949824 | uncultured Gemmatimonadales bacterium | 412054 | Bacteria | Bacteria | 62.1 | 3.48e-5 | NTclustered | gi|2874253728|emb|OY969570.1| | 412054 | g207615 | i0 | 93.023 | 40.4957264957265 | 43 | 2 | 18 | 1 | 165 | 206 | 2733289 | 2733247 | MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 | blastn | 9476 | 62.1 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | uncultured Gemmatimonadales bacterium | |||
| 24766342 | 24766342 | PRJNA558770_P_NODE_255120_length_234_cov_2.195980_g253115_i0 | PRJNA558770 | 255120 | 234 | 2.19598 | 5.1385932 | uncultured Gemmatimonadales bacterium | 412054 | Bacteria | Bacteria | 106 | 1.59e-18 | NTclustered | gi|2874253728|emb|OY969570.1| | 412054 | g253115 | i0 | 92 | 0.320512820512821 | 75 | 6 | 32 | 0 | 1 | 75 | 1362315 | 1362241 | MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 | blastn | 75 | 106 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | uncultured Gemmatimonadales bacterium | |||
| 24766749 | 24766749 | PRJNA558770_P_NODE_282320_length_234_cov_1.698492_g280315_i0 | PRJNA558770 | 282320 | 234 | 1.698492 | 3.97447128 | uncultured Gemmatimonadales bacterium | 412054 | Bacteria | Bacteria | 108 | 4.41e-19 | NTclustered | gi|2874253728|emb|OY969570.1| | 412054 | g280315 | i0 | 93.243 | 0.782051282051282 | 74 | 3 | 31 | 2 | 1 | 73 | 4259030 | 4259102 | MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 | blastn | 183 | 108 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | uncultured Gemmatimonadales bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;