RNAquarium Metadata Server
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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA558770" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 10 ✖

tax_kingdom 1

bioproject 1

  • PRJNA558770 · 10 ✖

analysis 1

  • blastn · 10 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1814553 1814553 PRJNA558770_P_NODE_184922_length_234_cov_4.407035_g182917_i0 PRJNA558770 184922 234 4.407035 10.3124619 Micavibrio aeruginosavorus 349221 Bacteria Bacteria 135 2.02e-27   NTclustered gi|347589306|gb|CP002382.1| 856793 g182917 i0 98.684 0.632478632478632 76 1 63 0 1 76 944478 944553 Micavibrio aeruginosavorus ARL-13, complete genome blastn 148 135 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
3088424 3088424 PRJNA558770_P_NODE_122203_length_234_cov_8.944724_g120198_i0 PRJNA558770 122203 234 8.944724 20.93065416 Peredibacter starrii 28202 Bacteria Bacteria 91.6 4.44e-14   NTclustered gi|2631252187|gb|CP139487.1| 28202 g120198 i0 88.158 0.324786324786325 76 9 32 0 159 234 2125443 2125518 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 76 91.6 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
4956705 4956705 PRJNA558770_P_NODE_120564_length_234_cov_9.140704_g118559_i0 PRJNA558770 120564 234 9.140704 21.38924736 Peredibacter 263370 Bacteria Bacteria 137 5.62e-28   NTclustered gi|2631252187|gb|CP139487.1| 28202 g118559 i0 100 4.75213675213675 74 0 63 0 2 75 511939 512012 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 1112 137 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
8782982 8782982 PRJNA558770_P_NODE_54607_length_285_cov_14.796000_g52603_i0 PRJNA558770 54607 285 14.796 42.1686 Peredibacter 263370 Bacteria Bacteria 379 1.06e-100   NTclustered gi|2631252187|gb|CP139487.1| 28202 g52603 i0 99.519 213.60701754386 208 1 99 0 1 208 511506 511299 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 60878 379 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
10741520 10741520 PRJNA558770_P_NODE_114909_length_234_cov_9.879397_g112904_i0 PRJNA558770 114909 234 9.879397 23.11778898 Pigmentibacter ruber 2683196 Bacteria Bacteria 65.8 2.69e-6   NTclustered gi|2651759839|dbj|AP029159.1| 2683196 g112904 i0 87.5 0.551282051282051 56 7 24 0 14 69 1421285 1421230 Pigmentibacter ruber GTC16762 DNA, complete genome blastn 129 65.8 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales Silvanigrellaceae Pigmentibacter Pigmentibacter ruber
12019840 12019840 PRJNA558770_P_NODE_302370_length_233_cov_16.606061_g300365_i0 PRJNA558770 302370 233 16.606061 38.69212213 Micavibrio aeruginosavorus 349221 Bacteria Bacteria 135 2.0100000000000003e-27   NTclustered gi|347589306|gb|CP002382.1| 856793 g300365 i0 100 10.4978540772532 73 0 63 0 4 76 717565 717637 Micavibrio aeruginosavorus ARL-13, complete genome blastn 2446 135 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
13294126 13294126 PRJNA558770_P_NODE_253811_length_234_cov_2.226131_g251806_i0 PRJNA558770 253811 234 2.226131 5.20914654 Micavibrio aeruginosavorus 349221 Bacteria Bacteria 111 3.41e-20   NTclustered gi|469926873|gb|CP003538.1| 349215 g251806 i0 93.333 0.641025641025641 75 5 32 0 1 75 1830920 1830846 Micavibrio aeruginosavorus EPB, complete genome blastn 150 111 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
16431416 16431416 PRJNA558770_P_NODE_143273_length_234_cov_6.924623_g141268_i0 PRJNA558770 143273 234 6.924623 16.20361782 Micavibrio 213485 Bacteria Bacteria 139 1.56e-28   NTclustered gi|469926873|gb|CP003538.1| 349215 g141268 i0 100 82.2863247863248 75 0 64 0 1 75 463407 463333 Micavibrio aeruginosavorus EPB, complete genome blastn 19255 139 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
17118587 17118587 PRJNA558770_P_NODE_306454_length_233_cov_13.904040_g304449_i0 PRJNA558770 306454 233 13.90404 32.3964132 Micavibrio aeruginosavorus 349221 Bacteria Bacteria 137 5.6000000000000005e-28   NTclustered gi|347589306|gb|CP002382.1| 856793 g304449 i0 98.701 0.656652360515021 77 1 66 0 1 77 536914 536990 Micavibrio aeruginosavorus ARL-13, complete genome blastn 153 137 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
23494095 23494095 PRJNA558770_P_NODE_389039_length_180_cov_4.020690_g387034_i0 PRJNA558770 389039 180 4.02069 7.237242 Peredibacter starrii 28202 Bacteria Bacteria 313 6.34e-81   NTclustered gi|2631252187|gb|CP139487.1| 28202 g387034 i0 98.315 4.73333333333333 178 3 99 0 1 178 512294 512117 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 852 313 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;