RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA558770" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA558770 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13293380 13293380 PRJNA558770_P_NODE_209871_length_234_cov_3.417085_g207866_i0 PRJNA558770 209871 234 3.417085 7.9959789 Bradymonas sediminis 1548548 Bacteria Bacteria 104 5.7e-18   NTclustered gi|1406952946|gb|CP030032.1| 1548548 g207866 i0 91.892 3.12393162393162 74 6 32 0 1 74 2971026 2971099 Bradymonas sediminis strain FA350 chromosome, complete genome blastn 731 104 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Bradymonas Bradymonas sediminis
17706994 17706994 PRJNA558770_P_NODE_199594_length_234_cov_3.798995_g197589_i0 PRJNA558770 199594 234 3.798995 8.8896483 delta/epsilon subdivisions 68525 Bacteria Bacteria 139 1.56e-28   NTclustered gi|451917505|gb|KC451369.1| 34034 g197589 i0 100 32.0641025641026 75 0 32 0 160 234 98 172 Uncultured delta proteobacterium clone RLBp4660 16S ribosomal RNA gene, partial sequence blastn 7503 139 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;