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contig_metadata

27 rows where analysis = "blastn", bioproject = "PRJNA558770" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 27 ✖

bioproject 1

  • PRJNA558770 · 27 ✖

analysis 1

  • blastn · 27 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
539845 539845 PRJNA558770_P_NODE_241401_length_234_cov_2.507538_g239396_i0 PRJNA558770 241401 234 2.507538 5.86763892 Chlamydomonas reinhardtii 3055 Plants Plants 52.8 0.021   NTclustered gi|2082242479|ref|XM_043060917.1| 3055 g239396 i0 100 0.239316239316239 28 0 12 0 11 38 1910 1937 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_03g173400v5), mRNA blastn 56 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
1816825 1816825 PRJNA558770_P_NODE_33442_length_372_cov_4.629080_g31460_i0 PRJNA558770 33442 372 4.62908 17.2201776 Chlamydomonas reinhardtii 3055 Plants Plants 52.8 0.035   NTclustered gi|2082259188|ref|XM_043067761.1| 3055 g31460 i0 100 0.0752688172043011 28 0 8 0 342 369 762 735 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_11g482050v5), mRNA blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
2405440 2405440 PRJNA558770_P_NODE_52462_length_294_cov_10.652510_g50459_i0 PRJNA558770 52462 294 10.65251 31.3183794 Scenedesmaceae 3086 Plants Plants 427 3.88e-115   NTclustered gi|2386955046|ref|NC_068582.1| 55409 g50459 i0 92.881 182.789115646258 295 19 100 2 1 294 89148 88855 Coelastrum microporum chloroplast, complete genome blastn 53740 427 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Coelastrum Coelastrum microporum
3093086 3093086 PRJNA558770_P_NODE_5043_length_738_cov_9.860597_g3872_i0 PRJNA558770 5043 738 9.860597 72.77120586 Desmochloris halophila 138176 Plants Plants 294 1.11e-74   NTclustered gi|371782086|emb|HE610118.1| 138176 g3872 i0 98.214 55.7628726287263 168 3 65 0 305 472 2130 1963 Desmochloris halophila 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain UTEX 2073 blastn 41153 294 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Chlorocystidales Chlorocystidaceae Desmochloris Desmochloris halophila
3681171 3681171 PRJNA558770_P_NODE_387083_length_187_cov_4.190789_g385078_i0 PRJNA558770 387083 187 4.190789 7.83677543 Scenedesmaceae 3086 Plants Plants 279 6.74e-71   NTclustered gi|1240946771|gb|KX756229.1| 3088 g385078 i0 96.988 123.930481283422 166 5 89 0 19 184 80711 80546 Tetradesmus obliquus chloroplast, complete genome blastn 23175 281 0.99288256227758 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus obliquus
3681186 3681186 PRJNA558770_P_NODE_389163_length_179_cov_23.409722_g387158_i0 PRJNA558770 389163 179 23.409722 41.90340238 Scenedesmaceae 3086 Plants Plants 316 4.869999999999999e-82   NTclustered gi|1525820382|dbj|LC153788.1| 3088 g387158 i0 98.87 99 177 2 99 0 1 177 563 387 Tetradesmus obliquus gene for 28S ribosormal RNA, partial sequence, strain: SIT06 blastn 17721 316 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus obliquus
5645687 5645687 PRJNA558770_P_NODE_397085_length_152_cov_3.529915_g395080_i0 PRJNA558770 397085 152 3.529915 5.3654708 Chlamydomonas gelatinosa 3059 Plants Plants 263 5.269999999999999e-66   NTclustered gi|288662|emb|Z15151.1| 3059 g395080 i0 100 127.953947368421 142 0 93 0 1 142 1769 1628 Chloroplast Chlamydomonas gelatinosa rrnL gene blastn 19449 263 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas gelatinosa
8192304 8192304 PRJNA558770_P_NODE_214887_length_234_cov_3.251256_g212882_i0 PRJNA558770 214887 234 3.251256 7.60793904 Coelastrum microporum 55409 Plants Plants 137 5.62e-28   NTclustered gi|2386955046|ref|NC_068582.1| 55409 g212882 i0 100 47.7564102564103 74 0 64 0 161 234 87497 87570 Coelastrum microporum chloroplast, complete genome blastn 11175 137 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Coelastrum Coelastrum microporum
8783120 8783120 PRJNA558770_P_NODE_71487_length_245_cov_15.228571_g69482_i0 PRJNA558770 71487 245 15.228571 37.30999895 Scenedesmaceae 3086 Plants Plants 239 1.5799999999999998e-58   NTclustered gi|2875298507|gb|PQ301446.1| 2782530 g69482 i0 95.364 88.4244897959184 151 5 61 1 1 149 100022 100172 Crucigenia quadrata strain FACHB-1904 chloroplast, complete genome blastn 21664 241 0.991701244813278 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Crucigenia Crucigenia quadrata
9467403 9467403 PRJNA558770_P_NODE_180228_length_234_cov_4.633166_g178223_i0 PRJNA558770 180228 234 4.633166 10.84160844 Ulothrix zonata 43941 Plants Plants 433 6.41e-117   NTclustered gi|1616636|emb|Z47999.1| 43941 g178223 i0 100 100 234 0 100 0 1 234 590 823 U.zonata 5.8S, 18S and 26S rRNA genes blastn 23400 433 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulotrichales Ulotrichaceae Ulothrix Ulothrix zonata
9468262 9468262 PRJNA558770_P_NODE_226048_length_234_cov_2.914573_g224043_i0 PRJNA558770 226048 234 2.914573 6.82010082 Coccomyxa viridis 1274662 Plants Plants 111 3.41e-20   NTclustered gi|2663407540|emb|OY754499.1| 1274662 g224043 i0 93.333 0.320512820512821 75 5 32 0 1 75 153310 153384 Coccomyxa viridis genome assembly, organelle: plastid blastn 75 111 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa viridis
9470113 9470113 PRJNA558770_P_NODE_383568_length_202_cov_6.011976_g381563_i0 PRJNA558770 383568 202 6.011976 12.14419152 Coelastrum microporum 55409 Plants Plants 357 3.3299999999999996e-94   NTclustered gi|2386955046|ref|NC_068582.1| 55409 g381563 i0 98.515 116.381188118812 202 3 100 0 1 202 86472 86271 Coelastrum microporum chloroplast, complete genome blastn 23509 357 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Coelastrum Coelastrum microporum
12018819 12018819 PRJNA558770_P_NODE_236490_length_234_cov_2.628141_g234485_i0 PRJNA558770 236490 234 2.628141 6.14984994 Ulothrix zonata 43941 Plants Plants 134 7.28e-27   NTclustered gi|1409970263|gb|MG721833.1| 43941 g234485 i0 98.667 0.641025641025641 75 1 64 0 160 234 662 588 Ulothrix zonata CcsA (ccsA) gene, complete cds; chloroplast blastn 150 134 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulotrichales Ulotrichaceae Ulothrix Ulothrix zonata
12608782 12608782 PRJNA558770_P_NODE_374690_length_230_cov_1.774359_g372685_i0 PRJNA558770 374690 230 1.774359 4.0810257 Chloroidium 1034479 Plants Plants 156 1.52e-33   NTclustered gi|283766139|gb|GQ921930.1| 3082 g372685 i0 97.802 45.895652173913 91 1 71 1 141 230 314 224 Pseudochlorella aquatica 23S large subunit ribosomal RNA (rrnL) gene, partial sequence; chloroplast blastn 10556 156 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium saccharophilum
13294518 13294518 PRJNA558770_P_NODE_280031_length_234_cov_1.733668_g278026_i0 PRJNA558770 280031 234 1.733668 4.05678312 Auxenochlorella protothecoides 3075 Plants Plants 58.4 4.5e-4   NTclustered gi|760446334|ref|XM_011401934.1| 3075 g278026 i0 97.143 0.14957264957265 35 0 15 1 41 74 597 563 Auxenochlorella protothecoides SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 partial mRNA blastn 35 58.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
13295630 13295630 PRJNA558770_P_NODE_384831_length_196_cov_11.391304_g382826_i0 PRJNA558770 384831 196 11.391304 22.32695584 Sarcinofilum mucosum 141643 Plants Plants 254 4.33e-63   NTclustered gi|1197510887|ref|NC_034709.1| 141643 g382826 i0 90.674 2.95408163265306 193 14 97 4 2 191 146239 146430 Trichosarcina mucosa culture SAG:4.90 chloroplast, complete genome blastn 579 254 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulotrichales Sarcinofilaceae Sarcinofilum Sarcinofilum mucosum
13883967 13883967 PRJNA558770_P_NODE_59811_length_270_cov_6.051064_g57807_i0 PRJNA558770 59811 270 6.051064 16.3378728 Eukaryota 2759 Plants Plants 291 4.82e-74   NTclustered gi|1160446|emb|Z28970.1| 34157 g57807 i0 97.633 62.5925925925926 169 4 63 0 1 169 1860 2028 G.planctonica 5.8S, 18S and 26S rRNA genes blastn 16900 291 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulotrichales Ulotrichaceae Gloeotilopsis Gloeotilopsis planctonica
16432866 16432866 PRJNA558770_P_NODE_66113_length_256_cov_7.334842_g64108_i0 PRJNA558770 66113 256 7.334842 18.77719552 root 1 Root_unresolved Root_unresolved 265 2.7499999999999997e-66   NTclustered gi|1212783794|gb|MF083691.1| 3055 g64108 i0 93.82 91.625 178 8 70 2 79 256 37326 37152 Chlamydomonas reinhardtii strain CC-1051 M18 (ac9) mt+ chloroplast, complete genome blastn 23456 265 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
17707854 17707854 PRJNA558770_P_NODE_389534_length_178_cov_7.853147_g387529_i0 PRJNA558770 389534 178 7.853147 13.97860166 root 1 Root_unresolved Root_unresolved 285 1.3599999999999998e-72   NTclustered gi|728042170|gb|KM438407.1| 41300 g387529 i0 95.506 117.213483146067 178 8 100 0 1 178 467 644 Choricystis parasitica isolate CAUP H 1984 photosystem II protein D1 (psbA) gene, partial cds; chloroplast blastn 20864 285 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae     Choricystis Choricystis parasitica
17707905 17707905 PRJNA558770_P_NODE_395234_length_159_cov_8.088710_g393229_i0 PRJNA558770 395234 159 8.08871 12.8610489 Scenedesmaceae 3086 Plants Plants 287 3.32e-73   NTclustered gi|356494234|gb|JN169783.1| 3088 g393229 i0 100 98.1761006289308 155 0 97 0 1 155 738 584 Scenedesmus obliquus isolate RAIW03 large subunit ribosomal RNA gene, partial sequence blastn 15610 287 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus obliquus
18393641 18393641 PRJNA558770_P_NODE_392075_length_169_cov_11.813433_g390070_i0 PRJNA558770 392075 169 11.813433 19.96470177 Sykidion marinum 44573 Plants Plants 87.9 3.87e-13   NTclustered gi|1197510977|ref|NC_034710.1| 44573 g390070 i0 83.673 4.14792899408284 98 11 56 5 75 169 98730 98825 Pseudoneochloris marina culture UTEX:1445 chloroplast, complete genome blastn 701 87.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Sykidiales Sykidiacaeae Sykidion Sykidion marinum
18981278 18981278 PRJNA558770_P_NODE_387055_length_187_cov_5.480263_g385050_i0 PRJNA558770 387055 187 5.480263 10.24809181 Chlorophyta 3041 Plants Plants 339 1.1e-88   NTclustered gi|347657202|emb|FR694220.1| 3077 g385050 i0 99.462 88.7700534759358 186 1 99 0 1 186 395 210 Chlorella vulgaris 5S rRNA gene (partial), IGS and 26S rRNA gene (partial), specimen voucher SAG:211-11b, clone Ac15I1MA24 blastn 16600 339 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella vulgaris
20256360 20256360 PRJNA558770_P_NODE_380056_length_217_cov_16.142857_g378051_i0 PRJNA558770 380056 217 16.142857 35.02999969 Tetradesmus 91192 Plants Plants 377 2.78e-100   NTclustered gi|1240946771|gb|KX756229.1| 3088 g378051 i0 98.157 33.7695852534562 217 3 100 1 1 217 82248 82033 Tetradesmus obliquus chloroplast, complete genome blastn 7328 377 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus obliquus
22217273 22217273 PRJNA558770_P_NODE_257598_length_234_cov_2.145729_g255593_i0 PRJNA558770 257598 234 2.145729 5.02100586 Desmodesmus abundans 77547 Plants Plants 137 5.62e-28   NTclustered gi|2312613210|ref|NC_066651.1| 77547 g255593 i0 100 0.628205128205128 74 0 63 0 160 233 9177 9250 Desmodesmus abundans strain FBCC-A1277 chloroplast, complete genome blastn 147 137 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Desmodesmus Desmodesmus abundans
23490838 23490838 PRJNA558770_P_NODE_162699_length_234_cov_5.592965_g160694_i0 PRJNA558770 162699 234 5.592965 13.0875381 Tetradesmus arenicola 2291721 Plants Plants 52.8 0.021   NTclustered gi|2692951856|ref|NC_086756.1| 2291721 g160694 i0 100 0.11965811965812 28 0 12 0 195 222 60607 60634 Tetradesmus arenicola strain SAG 2564 chloroplast, complete genome blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus arenicola
24765452 24765452 PRJNA558770_P_NODE_201240_length_234_cov_3.733668_g199235_i0 PRJNA558770 201240 234 3.733668 8.73678312 Chlamydomonas mexicana 28460 Plants Plants 135 2.02e-27   NTclustered gi|397100|emb|X68910.1| 28460 g199235 i0 98.684 38.6495726495726 76 1 32 0 1 76 1353 1428 Chloroplast Chlamydomonas mexicana rrnL gene, exon 1 blastn 9044 135 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas mexicana
25355578 25355578 PRJNA558770_P_NODE_241640_length_234_cov_2.502513_g239635_i0 PRJNA558770 241640 234 2.502513 5.85588042 Chlorophyta 3041 Plants Plants 111 3.41e-20   NTclustered gi|6120027|gb|AF183487.1| 52685 g239635 i0 94.444 30.7051282051282 72 4 31 0 5 76 1299 1228 Treubaria schmidlei culture SAG:36.83 strain SAG 36.83 28S ribosomal RNA gene, partial sequence blastn 7185 111 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae   Treubariaceae Treubaria Treubaria schmidlei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;