RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA558770" and tax_clade = "Stenosarchaea group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Stenosarchaea group · 3 ✖

bioproject 1

  • PRJNA558770 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1813607 1813607 PRJNA558770_P_NODE_140722_length_234_cov_7.130653_g138717_i0 PRJNA558770 140722 234 7.130653 16.68572802 Haloferax sp. YSSS75 3388564 Archaea Archaea 71.3 5.79e-8   NTclustered gi|2890410415|gb|CP177207.1| 3388564 g138717 i0 87.097 0.615384615384615 62 8 26 0 6 67 383979 384040 Haloferax sp. YSSS75 plasmid unnamed1, complete sequence blastn 144 71.3 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax sp. YSSS75
9469137 9469137 PRJNA558770_P_NODE_283248_length_234_cov_1.683417_g281243_i0 PRJNA558770 283248 234 1.683417 3.93919578 uncultured Methanocorpusculum sp. 176309 Archaea Archaea 99 2.65e-16   NTclustered gi|2621786121|emb|OY782579.1| 176309 g281243 i0 90.667 25.4529914529915 75 5 32 2 159 232 612921 612994 MAG: uncultured Methanocorpusculum sp. isolate 00e4b8a3-32d7-4b6d-ae68-a36d250ebca6 genome assembly, chromosome: 1 blastn 5956 99 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanocorpusculaceae Methanocorpusculum uncultured Methanocorpusculum sp.
18393236 18393236 PRJNA558770_P_NODE_362775_length_232_cov_5.076142_g360770_i0 PRJNA558770 362775 232 5.076142 11.77664944 Halalkalicoccus jeotgali 413810 Archaea Archaea 52.8 0.021   NTclustered gi|299123054|gb|CP002062.1| 795797 g360770 i0 100 0.120689655172414 28 0 12 0 42 69 1142322 1142295 Halalkalicoccus jeotgali B3, complete genome blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halalkalicoccus Halalkalicoccus jeotgali

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;