RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA558770" and tax_clade = "Methanomada group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 7 ✖

bioproject 1

  • PRJNA558770 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3092062 3092062 PRJNA558770_P_NODE_333583_length_233_cov_5.333333_g331578_i0 PRJNA558770 333583 233 5.333333 12.42666589 uncultured Methanobacteriaceae archaeon 176233 Archaea Archaea 97.1 9.5e-16   NTclustered gi|2874253877|emb|OY969932.1| 176233 g331578 i0 95.082 0.261802575107296 61 3 26 0 163 223 499293 499353 MAG: uncultured Methanobacteriaceae archaeon isolate MFD09286.bin.c.5 genome assembly, chromosome: 1 blastn 61 97.1 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae   uncultured Methanobacteriaceae archaeon
5643030 5643030 PRJNA558770_P_NODE_202285_length_234_cov_3.693467_g200280_i0 PRJNA558770 202285 234 3.693467 8.64271278 uncultured Methanobacteriaceae archaeon 176233 Archaea Archaea 82.4 2.67e-11   NTclustered gi|2874253858|emb|OY969914.1| 176233 g200280 i0 92.982 0.700854700854701 57 3 24 1 160 216 2333682 2333627 MAG: uncultured Methanobacteriaceae archaeon isolate MFD02416.bin.1.248 genome assembly, chromosome: 1 blastn 164 82.4 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae   uncultured Methanobacteriaceae archaeon
5644783 5644783 PRJNA558770_P_NODE_316145_length_233_cov_10.080808_g314140_i0 PRJNA558770 316145 233 10.080808 23.48828264 Methanobrevibacter acididurans 120963 Archaea Archaea 124 4.36e-24   NTclustered gi|2871247231|gb|CP166991.1| 120963 g314140 i0 97.26 3.47210300429185 73 2 31 0 161 233 339776 339704 Methanobrevibacter acididurans strain DSM 15163 chromosome, complete genome blastn 809 124 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter acididurans
8781511 8781511 PRJNA558770_P_NODE_111547_length_234_cov_10.351759_g109542_i0 PRJNA558770 111547 234 10.351759 24.22311606 Methanobacterium 2160 Archaea Archaea 82.4 2.67e-11   NTclustered gi|2874253795|emb|OY969779.1| 176233 g109542 i0 94.34 1.05128205128205 53 3 23 0 163 215 818362 818414 MAG: uncultured Methanobacteriaceae archaeon isolate MFD04716.bin.c.1 genome assembly, chromosome: 1 blastn 246 82.4 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae   uncultured Methanobacteriaceae archaeon
10742812 10742812 PRJNA558770_P_NODE_172209_length_234_cov_5.045226_g170204_i0 PRJNA558770 172209 234 5.045226 11.80582884 uncultured Methanobacteriaceae archaeon 176233 Archaea Archaea 76.8 1.24e-9   NTclustered gi|2874253858|emb|OY969914.1| 176233 g170204 i0 92.453 0.452991452991453 53 4 23 0 1 53 2218500 2218552 MAG: uncultured Methanobacteriaceae archaeon isolate MFD02416.bin.1.248 genome assembly, chromosome: 1 blastn 106 76.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae   uncultured Methanobacteriaceae archaeon
22216663 22216663 PRJNA558770_P_NODE_219238_length_234_cov_3.115578_g217233_i0 PRJNA558770 219238 234 3.115578 7.29045252 Methanobacterium petrolearium 710190 Archaea Archaea 111 3.41e-20   NTclustered gi|2465759960|dbj|AP027739.1| 710190 g217233 i0 93.421 0.324786324786325 76 4 32 1 160 234 438122 438047 Methanobacterium petrolearium NBRC 105198 DNA, complete genome blastn 76 111 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium petrolearium
24765077 24765077 PRJNA558770_P_NODE_182920_length_234_cov_4.507538_g180915_i0 PRJNA558770 182920 234 4.507538 10.54763892 Methanobacterium ferruginis 710191 Archaea Archaea 54.7 0.006   NTclustered gi|2465756734|dbj|AP027738.1| 710191 g180915 i0 100 0.123931623931624 29 0 12 0 167 195 884095 884123 Methanobacterium ferruginis NBRC 105197 DNA, complete genome blastn 29 54.7 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium ferruginis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;