RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA557895" and tax_phylum = "Mucoromycota"

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tax_superkingdom 1

tax_phylum 1

  • Mucoromycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA557895 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6231974 6231974 PRJNA557895_P_NODE_18945_length_213_cov_0.932927_g18590_i0 PRJNA557895 18945 213 0.932927 1.98713451 Acaulospora 27372 Fungi Fungi 52.8 0.019   NTclustered gi|648295668|emb|HG422734.1| 1387159 g18590 i0 100 1.74647887323944 28 0 13 0 100 127 621 594 Acaulospora spinosissima genomic DNA containing 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and 28S rRNA gene, isolate FO438, clone 2r blastn 372 52.8 1 Eukaryota Opisthokonta Fungi Mucoromycota Glomeromycetes Diversisporales Acaulosporaceae Acaulospora Acaulospora spinosissima
8189283 8189283 PRJNA557895_P_NODE_547_length_1558_cov_27.053678_g49_i28 PRJNA557895 547 1558 27.053678 421.49630324 uncultured Archaeosporales 587031 Fungi Fungi 165 1.97e-35   NTclustered gi|1483209288|gb|MH982501.1| 587031 g49 i28 85.443 10.1745827984596 158 23 10 0 119 276 1959 2116 Uncultured Archaeosporales clone CL0109 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 15852 165 1 Eukaryota Opisthokonta Fungi Mucoromycota Glomeromycetes Archaeosporales     uncultured Archaeosporales
13289898 13289898 PRJNA557895_P_NODE_17431_length_221_cov_0.889535_g17076_i0 PRJNA557895 17431 221 0.889535 1.96587235 Rhizophagus irregularis 588596 Fungi Fungi 54.7 0.005   NTclustered gi|2749788157|ref|XM_066143482.1| 588596 g17076 i0 96.875 0.144796380090498 32 1 14 0 30 61 1199 1230 Rhizophagus irregularis uncharacterized protein (OCT59_026835), partial mRNA blastn 32 54.7 1 Eukaryota Opisthokonta Fungi Mucoromycota Glomeromycetes Glomerales Glomeraceae Rhizophagus Rhizophagus irregularis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;