RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA557895" and tax_phylum = "Cnidaria"

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tax_superkingdom 1

tax_phylum 1

  • Cnidaria · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA557895 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3086978 3086978 PRJNA557895_P_NODE_24323_length_188_cov_1.100719_g23968_i0 PRJNA557895 24323 188 1.100719 2.06935172 Myxidium streisingeri 1542451 Cnidaria other_Eukaryota 346 6.6e-91   NTclustered gi|681870004|gb|KM001687.1| 1542451 g23968 i0 100 5.58510638297872 187 0 99 0 1 187 2145 2331 Myxidium streisingeri clone ZF12 18S small subunit ribosomal RNA gene, partial sequence blastn 1050 346 1 Eukaryota Opisthokonta Metazoa Cnidaria Myxozoa Bivalvulida Myxidiidae Myxidium Myxidium streisingeri
6913700 6913700 PRJNA557895_P_NODE_11966_length_267_cov_0.935780_g11611_i0 PRJNA557895 11966 267 0.93578 2.4985326 Anemonia sulcata 6108 Cnidaria other_Eukaryota 52.8 0.024   NTclustered gi|2917940737|emb|OZ237566.1| 6108 g11611 i0 100 0.104868913857678 28 0 10 0 184 211 8559406 8559379 Anemonia sulcata genome assembly, chromosome: 12 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Actiniaria Actiniidae Anemonia Anemonia sulcata
8188841 8188841 PRJNA557895_P_NODE_21687_length_199_cov_2.066667_g21332_i0 PRJNA557895 21687 199 2.066667 4.11266733 Eunicella cavolini 317547 Cnidaria other_Eukaryota 60.2 1.03e-4   NTclustered gi|2918369537|emb|OZ237719.1| 317547 g21332 i0 100 0.160804020100503 32 0 16 0 153 184 6972426 6972457 Eunicella cavolini genome assembly, chromosome: 3 blastn 32 60.2 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Malacalcyonacea Eunicellidae Eunicella Eunicella cavolini
18388193 18388193 PRJNA557895_P_NODE_35055_length_163_cov_1.728070_g34700_i0 PRJNA557895 35055 163 1.72807 2.8167541 Pocillopora verrucosa 203993 Cnidaria other_Eukaryota 52.8 0.014   NTclustered gi|2751554566|ref|XM_066168567.1| 203993 g34700 i0 100 0.343558282208589 28 0 17 0 91 118 4933 4906 PREDICTED: Pocillopora verrucosa nephrocystin-3-like (LOC131784025), transcript variant X2, mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Scleractinia Pocilloporidae Pocillopora Pocillopora verrucosa
19662244 19662244 PRJNA557895_P_NODE_20056_length_207_cov_1.291139_g19701_i0 PRJNA557895 20056 207 1.291139 2.67265773 Hydra vulgaris 6087 Cnidaria other_Eukaryota 54.7 0.005   NTclustered gi|2744814801|ref|XM_012710030.3| 6087 g19701 i0 100 0.280193236714976 29 0 14 0 171 199 1121 1149 PREDICTED: Hydra vulgaris uncharacterized LOC100207073 (LOC100207073), transcript variant X1, mRNA blastn 58 54.7 1 Eukaryota Opisthokonta Metazoa Cnidaria Hydrozoa Anthoathecata Hydridae Hydra Hydra vulgaris
24762222 24762222 PRJNA557895_P_NODE_22680_length_195_cov_1.047945_g22325_i0 PRJNA557895 22680 195 1.047945 2.04349275 Chloromyxum careni 941395 Cnidaria other_Eukaryota 122 1.2699999999999999e-23   NTclustered gi|315666422|gb|HM641795.1| 941395 g22325 i0 81.25 59.5076923076923 160 23 80 5 25 180 182 338 Chloromyxum careni large subunit ribosomal RNA gene, partial sequence blastn 11604 122 1 Eukaryota Opisthokonta Metazoa Cnidaria Myxozoa Bivalvulida Chloromyxidae Chloromyxum Chloromyxum careni

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;