RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA557895" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA557895 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3086960 3086960 PRJNA557895_P_NODE_23463_length_191_cov_2.049296_g23108_i0 PRJNA557895 23463 191 2.049296 3.91415536 Arcobacter ellisii 913109 Bacteria Bacteria 353 4.02e-93   NTclustered gi|1474793334|gb|CP032097.1| 913109 g23108 i0 100 324.643979057592 191 0 100 0 1 191 955081 954891 Arcobacter ellisii strain LMG 26155 chromosome, complete genome blastn 62007 353 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter ellisii
6913968 6913968 PRJNA557895_P_NODE_24066_length_189_cov_1.092857_g23711_i0 PRJNA557895 24066 189 1.092857 2.06549973 Helicobacter pylori 210 Bacteria Bacteria 56.5 0.001   NTclustered gi|2640382061|gb|CP079086.1| 210 g23711 i0 100 2.06349206349206 30 0 16 0 143 172 165655 165684 Helicobacter pylori strain HpGP-ALG-001 chromosome, complete genome blastn 390 56.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
7506373 7506373 PRJNA557895_P_NODE_23726_length_190_cov_1.439716_g23371_i0 PRJNA557895 23726 190 1.439716 2.7354604 root 1 Root_unresolved Root_unresolved 351 1.4399999999999997e-92   NTclustered gi|2562786027|gb|CP120256.1| 197 g23371 i0 100 120.510526315789 190 0 100 0 1 190 1480496 1480685 Campylobacter jejuni strain PS_41_2021 chromosome, complete genome blastn 22897 351 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
15156318 15156318 PRJNA557895_P_NODE_1952_length_760_cov_1.457103_g1643_i0 PRJNA557895 1952 760 1.457103 11.0739828 root 1 Root_unresolved Root_unresolved 1404 0   NTclustered gi|1887121882|gb|CP059971.1| 197 g1643 i0 100 100 760 0 100 0 1 760 102408 101649 Campylobacter jejuni strain C34 chromosome, complete genome blastn 76000 1404 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;