RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA557895" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA557895 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6231995 6231995 PRJNA557895_P_NODE_23025_length_193_cov_2.083333_g22670_i0 PRJNA557895 23025 193 2.083333 4.02083269 Thermus 270 Bacteria Bacteria 357 3.1499999999999996e-94   NTclustered gi|470468782|ref|NR_076136.1| 37636 g22670 i0 100 150.886010362694 193 0 100 0 1 193 1648 1840 Thermus scotoductus strain SA-01 23S ribosomal RNA gene, complete sequence blastn 29121 357 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus scotoductus
6914046 6914046 PRJNA557895_P_NODE_27426_length_175_cov_2.317460_g27071_i0 PRJNA557895 27426 175 2.31746 4.055555 Thermus sp. NEB1569 2918899 Bacteria Bacteria 318 1.32e-82   NTclustered gi|2199052145|gb|CP092445.1| 2918899 g27071 i0 99.429 153.337142857143 175 1 100 0 1 175 410232 410406 Thermus sp. NEB1569 chromosome, complete genome blastn 26834 318 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus sp. NEB1569
22213421 22213421 PRJNA557895_P_NODE_39398_length_157_cov_2.703704_g39043_i0 PRJNA557895 39398 157 2.703704 4.24481528 Thermus sp. NEB1569 2918899 Bacteria Bacteria 291 2.52e-74   NTclustered gi|2199052145|gb|CP092445.1| 2918899 g39043 i0 100 143.528662420382 157 0 100 0 1 157 409935 410091 Thermus sp. NEB1569 chromosome, complete genome blastn 22534 291 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus sp. NEB1569

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;