RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA557895" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 4 ✖

bioproject 1

  • PRJNA557895 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4956339 4956339 PRJNA557895_P_NODE_11224_length_274_cov_5.213333_g10869_i0 PRJNA557895 11224 274 5.213333 14.28453242 root 1 Root_unresolved Root_unresolved 507 4.47e-139   NTclustered gi|2621785414|emb|OY781872.1| 1005933 g10869 i0 100 367.317518248175 274 0 100 0 1 274 3116228 3115955 MAG: uncultured Methanoregula sp. isolate a338d9b7-13de-4e9d-8f1a-cfe667c23436 genome assembly, chromosome: 1 blastn 100645 507 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula uncultured Methanoregula sp.
6914419 6914419 PRJNA557895_P_NODE_6626_length_347_cov_2.046980_g6271_i0 PRJNA557895 6626 347 2.04698 7.1030206 Natronorubrum daqingense 588898 Archaea Archaea 69.4 3.26e-7   NTclustered gi|1134979927|gb|CP019327.1| 588898 g6271 i0 85.294 0.195965417867435 68 8 19 2 124 190 592951 592885 Natronorubrum daqingense strain JX313, complete sequence blastn 68 69.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronorubrum Natronorubrum daqingense
7506426 7506426 PRJNA557895_P_NODE_5886_length_371_cov_1.229814_g5531_i0 PRJNA557895 5886 371 1.229814 4.56260994 Methanococcus 2184 Archaea Archaea 52.8 0.035   NTclustered gi|2310517020|gb|CP104873.1| 42879 g5531 i0 100 0.150943396226415 28 0 8 0 322 349 1372319 1372346 Methanococcus aeolicus strain PL15/HP chromosome, complete genome blastn 56 52.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanococcaceae Methanococcus Methanococcus aeolicus
8189195 8189195 PRJNA557895_P_NODE_37327_length_162_cov_0.902655_g36972_i0 PRJNA557895 37327 162 0.902655 1.4623011 Methanobacterium paludis 868131 Archaea Archaea 54.7 0.004   NTclustered gi|333824386|gb|CP002772.1| 868131 g36972 i0 100 0.179012345679012 29 0 18 0 60 88 1466219 1466191 Methanobacterium paludis strain SWAN1, complete genome blastn 29 54.7 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium paludis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;