RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA557895" and tax_clade = "ant, tsetse, mealybug, aphid, etc. endosymbionts"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • ant, tsetse, mealybug, aphid, etc. endosymbionts · 3 ✖

bioproject 1

  • PRJNA557895 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14565008 14565008 PRJNA557895_P_NODE_23532_length_191_cov_1.077465_g23177_i0 PRJNA557895 23532 191 1.077465 2.05795815 Candidatus Blochmannia vicinus (nom. nud.) 251540 Bacteria Bacteria 62.1 2.73e-5   NTclustered gi|2506093074|gb|CP125213.1| 251540 g23177 i0 93.023 0.225130890052356 43 1 21 2 4 44 507938 507980 MAG: Candidatus Blochmannia vicinus isolate RG_C_vicinus_PSW18456_S1 blastn 43 62.1 1 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Candidatus Blochmanniella Candidatus Blochmannia vicinus (nom. nud.)
20938132 20938132 PRJNA557895_P_NODE_25717_length_182_cov_1.150376_g25362_i0 PRJNA557895 25717 182 1.150376 2.09368432 Candidatus Stammera capleta 2608262 Bacteria Bacteria 54.7 0.004   NTclustered gi|1269271234|gb|CP024013.1| 2608262 g25362 i0 100 0.159340659340659 29 0 16 0 145 173 41174 41146 MAG: Candidatus Stammera capleta isolate NZ1215 chromosome, complete genome blastn 29 54.7 1 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Candidatus Stammera Candidatus Stammera capleta
24762132 24762132 PRJNA557895_P_NODE_19140_length_212_cov_0.938650_g18785_i0 PRJNA557895 19140 212 0.93865 1.989938 Blochmannia endosymbiont of Camponotus sp. 700220 Bacteria Bacteria 60.2 1.11e-4   NTclustered gi|2246427109|gb|CP097757.1| 700220 g18785 i0 92.857 0.39622641509434 42 2 19 1 102 142 457719 457678 Blochmannia endosymbiont of Camponotus sp. strain C-024 chromosome, complete genome blastn 84 60.2 1 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Candidatus Blochmanniella Blochmannia endosymbiont of Camponotus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;