RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA557895" and tax_clade = "Sar"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA557895 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14565193 14565193 PRJNA557895_P_NODE_3152_length_552_cov_37.298211_g2810_i0 PRJNA557895 3152 552 37.298211 205.88612472 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 987 0   NTclustered gi|325194495|emb|FR825318.1| 890382 g2810 i0 98.913 240.791666666667 552 6 100 0 1 552 582 31 Albugo laibachii Nc14, genomic contig CONTIG_2072_NC14_v4_1125_53 blastn 132917 987 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
17114148 17114148 PRJNA557895_P_NODE_454_length_1725_cov_3.541766_g174_i1 PRJNA557895 454 1725 3.541766 61.0954635 Paramecium tetraurelia 5888 SAR_Eukaryotes SAR_Eukaryotes 63.9 8.21e-5   NTclustered gi|987228|gb|U20449.1|PTU20449 5888 g174 i1 89.796 0.0852173913043478 49 5 3 0 1127 1175 5996 5948 Paramecium tetraurelia cytoplasmic dynein heavy chain gene, partial cds blastn 147 63.9 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium tetraurelia
17706300 17706300 PRJNA557895_P_NODE_35934_length_163_cov_0.894737_g35579_i0 PRJNA557895 35934 163 0.894737 1.45842131 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.001   NTclustered gi|124513751|ref|XM_001350196.1| 36329 g35579 i0 100 0.552147239263804 30 0 18 0 132 161 3811 3840 Plasmodium falciparum 3D7 GTP-binding protein, putative (PF3D7_1352000), partial mRNA blastn 90 56.5 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
18979662 18979662 PRJNA557895_P_NODE_10735_length_280_cov_0.883117_g10380_i0 PRJNA557895 10735 280 0.883117 2.4727276 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.026   NTclustered gi|2785766952|ref|XM_067218628.1| 5824 g10380 i0 100 0.2 28 0 10 0 253 280 139 166 Plasmodium brasilianum uncharacterized protein (MKS88_005371), partial mRNA blastn 56 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium brasilianum
24762300 24762300 PRJNA557895_P_NODE_25940_length_181_cov_1.159091_g25585_i0 PRJNA557895 25940 181 1.159091 2.09795471 Plasmodium reichenowi 5854 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.004   NTclustered gi|1145255972|ref|XM_012905491.2| 5854 g25585 i0 96.875 0.176795580110497 32 1 18 0 150 181 1662 1631 Plasmodium reichenowi hypothetical protein partial mRNA blastn 32 54.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium reichenowi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;