RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA557895" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA557895 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3679601 3679601 PRJNA557895_P_NODE_3343_length_532_cov_2.571429_g2999_i0 PRJNA557895 3343 532 2.571429 13.68000228 Entamoeba 5758 Evosea other_Eukaryota 54.7 0.015   NTclustered gi|67480644|ref|XM_650580.1| 294381 g2999 i0 100 0.109022556390977 29 0 5 0 161 189 283 255 Entamoeba histolytica HM-1:IMSS acetyltransferase, putative (EHI_096770), partial mRNA blastn 58 54.7 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
18388110 18388110 PRJNA557895_P_NODE_31915_length_166_cov_0.871795_g31560_i0 PRJNA557895 31915 166 0.871795 1.4471797 Protophysarum sp. PV64 1215983 Evosea other_Eukaryota 252 1.28e-62   NTclustered gi|399764200|gb|JQ271711.1| 1215983 g31560 i0 94.012 1.68072289156627 167 9 100 1 1 166 855 689 Protophysarum sp. PV64 18S ribosomal RNA gene, partial sequence blastn 279 252 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Protophysarum Protophysarum sp. PV64

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;