RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA557436" and tax_superkingdom = "Archaea"

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tax_kingdom 2

tax_superkingdom 1

  • Archaea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA557436 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4362996 4362996 PRJNA557436_S_NODE_8404_length_155_cov_1.800000_g8356_i0 PRJNA557436 8404 155 1.8 2.79 Halovivax cerinus 1487865 Archaea Archaea 52.8 0.013   NTclustered gi|2279709464|gb|CP101824.1| 1487865 g8356 i0 100 0.180645161290323 28 0 18 0 32 59 1223968 1223995 Halovivax cerinus strain IBRC-M 10256 chromosome, complete genome blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Halovivax Halovivax cerinus
12014643 12014643 PRJNA557436_S_NODE_2930_length_225_cov_1.747368_g2882_i0 PRJNA557436 2930 225 1.747368 3.931578 Nitrosopumilaceae archaeon 2202732 Archaea Archaea 52.8 0.02   NTclustered gi|2893358431|emb|OZ220723.1| 2202732 g2882 i0 100 0.124444444444444 28 0 12 0 81 108 1811484 1811457 MAG: Nitrosopumilaceae archaeon isolate 679b85a9-901a-4549-bbbb-e934c43a20cf genome assembly, chromosome: 1 blastn 28 52.8 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae   Nitrosopumilaceae archaeon
23488093 23488093 PRJNA557436_S_NODE_1059_length_351_cov_11.215190_g1011_i0 PRJNA557436 1059 351 11.21519 39.3653169 Thermoplasmatales archaeon 2268204 Archaea Archaea 63.9 1.53e-5   NTclustered gi|2573961727|gb|CP133596.1| 2268204 g1011 i0 95.122 0.202279202279202 41 0 11 2 38 76 518115 518155 MAG: Thermoplasmatales archaeon isolate BR_05 chromosome, complete genome blastn 71 63.9 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Thermoplasmatales     Thermoplasmatales archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;