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contig_metadata

12 rows where analysis = "blastn", bioproject = "PRJNA557436" and tax_phylum = "Pisuviricota"

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tax_superkingdom 1

tax_phylum 1

  • Pisuviricota · 12 ✖

tax_kingdom 1

bioproject 1

  • PRJNA557436 · 12 ✖

analysis 1

  • blastn · 12 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3086642 3086642 PRJNA557436_S_NODE_2583_length_236_cov_18.502488_g2535_i0 PRJNA557436 2583 236 18.502488 43.66587168 Betacoronavirus pandemicum 3418604 Viruses Viruses 111 3.44e-20   NTclustered gi|2165836832|emb|OV197136.1| 2697049 g2535 i0 93.421 7.42372881355932 76 3 31 2 2 75 41 116 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 1752 111 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
3086672 3086672 PRJNA557436_S_NODE_903_length_376_cov_14.249267_g855_i0 PRJNA557436 903 376 14.249267 53.57724392 Betacoronavirus pandemicum 3418604 Viruses Viruses 117 1.25e-21   NTclustered gi|2165834320|emb|OV196026.1| 2697049 g855 i0 93.75 22.2792553191489 80 2 21 3 1 78 30015 29937 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 8377 117 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
4362970 4362970 PRJNA557436_S_NODE_2344_length_247_cov_7.056604_g2296_i0 PRJNA557436 2344 247 7.056604 17.42981188 Betacoronavirus pandemicum 3418604 Viruses Viruses 63.9 1.03e-5   NTclustered gi|2557654279|emb|OY684629.1| 2697049 g2296 i0 97.368 0.396761133603239 38 0 15 1 42 78 26154 26117 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 98 63.9 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
6913645 6913645 PRJNA557436_S_NODE_66_length_1299_cov_5.343354_g53_i0 PRJNA557436 66 1299 5.343354 69.41016846 Betacoronavirus pandemicum 3418604 Viruses Viruses 115 1.67e-20   NTclustered gi|2165834316|emb|OV196022.1| 2697049 g53 i0 93.671 6.39107005388761 79 2 6 3 1222 1299 591 515 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 8302 115 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
8188569 8188569 PRJNA557436_S_NODE_1327_length_316_cov_12.323843_g1279_i0 PRJNA557436 1327 316 12.323843 38.94334388 Betacoronavirus pandemicum 3418604 Viruses Viruses 134 1.03e-26   NTclustered gi|2165834316|emb|OV196022.1| 2697049 g1279 i0 98.684 0.591772151898734 76 0 24 1 1 75 515 590 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 187 134 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
12014637 12014637 PRJNA557436_S_NODE_1010_length_358_cov_22.990712_g962_i0 PRJNA557436 1010 358 22.990712 82.30674896 Betacoronavirus pandemicum 3418604 Viruses Viruses 134 1.18e-26   NTclustered gi|2165834316|emb|OV196022.1| 2697049 g962 i0 98.684 23.3826815642458 76 0 21 1 284 358 590 515 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 8371 134 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
14564701 14564701 PRJNA557436_S_NODE_992_length_361_cov_14.570552_g944_i0 PRJNA557436 992 361 14.570552 52.59969272 Betacoronavirus pandemicum 3418604 Viruses Viruses 117 1.2e-21   NTclustered gi|2165836832|emb|OV197136.1| 2697049 g944 i0 94.737 25 76 3 21 1 286 360 116 41 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 9025 117 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
17113441 17113441 PRJNA557436_S_NODE_3014_length_222_cov_21.208556_g2966_i0 PRJNA557436 3014 222 21.208556 47.08299432 Betacoronavirus pandemicum 3418604 Viruses Viruses 117 6.88e-22   NTclustered gi|2165836832|emb|OV197136.1| 2697049 g2966 i0 94.737 40.5630630630631 76 3 34 1 2 76 41 116 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 9005 117 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
18387575 18387575 PRJNA557436_S_NODE_1655_length_288_cov_12.430830_g1607_i0 PRJNA557436 1655 288 12.43083 35.8007904 Betacoronavirus pandemicum 3418604 Viruses Viruses 134 9.25e-27   NTclustered gi|2165834316|emb|OV196022.1| 2697049 g1607 i0 98.684 0.649305555555556 76 0 26 1 214 288 590 515 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 187 134 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
18387588 18387588 PRJNA557436_S_NODE_3015_length_222_cov_7.871658_g2967_i0 PRJNA557436 3015 222 7.871658 17.47508076 Betacoronavirus pandemicum 3418604 Viruses Viruses 106 1.49e-18   NTclustered gi|2165835426|emb|OV196492.1| 2697049 g2967 i0 92.308 0.779279279279279 78 1 34 4 148 222 138 63 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 173 106 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
20937742 20937742 PRJNA557436_S_NODE_2797_length_228_cov_21.699482_g2749_i0 PRJNA557436 2797 228 21.699482 49.47481896 Betacoronavirus pandemicum 3418604 Viruses Viruses 128 3.28e-25   NTclustered gi|2165834316|emb|OV196022.1| 2697049 g2749 i0 97.368 0.771929824561403 76 0 32 2 1 74 515 590 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 176 128 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
24761898 24761898 PRJNA557436_S_NODE_160_length_821_cov_6.811705_g53_i1 PRJNA557436 160 821 6.811705 55.92409805 Betacoronavirus pandemicum 3418604 Viruses Viruses 115 1.04e-20   NTclustered gi|2165834316|emb|OV196022.1| 2697049 g53 i1 93.671 10.1120584652862 79 2 10 3 1 78 515 591 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 8302 115 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;