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contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJNA556992" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 11 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA556992 · 11 ✖

analysis 1

  • blastn · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
530303 530303 PRJNA556992_P_NODE_568141_length_261_cov_3.159574_g565952_i0 PRJNA556992 568141 261 3.159574 8.24648814 Adineta vaga 104782 Rotifera other_Eukaryota 283 7.749999999999999e-72   NTclustered gi|194500447|gb|EU850438.1| 104782 g565952 i0 92.5 8.75478927203065 200 11 75 2 6 201 28845 29044 Adineta vaga hypothetical protein 18 gene, partial cds; hypothetical protein 19, coatomer, GPCR, beta-transducin repeat, speckle-type POZ, adenosine kinase, prefoldin subunit, translation initiation factor eIF-4E, rho GTPase activating protein, histone H4, histone H3, histone H2B, and histone H2Av genes, complete cds; and mitochondrial ribosomal protein s22 gene, partial cds blastn 2285 283 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
4359279 4359279 PRJNA556992_P_NODE_70564_length_452_cov_32.707124_g68389_i0 PRJNA556992 70564 452 32.707124 147.83620048 Philodina roseola 96448 Rotifera other_Eukaryota 566 1.27e-156   NTclustered gi|187936070|gb|EU652317.1| 96448 g68389 i0 94.309 88.6681415929203 369 21 82 0 2 370 20326 20694 Philodina roseola GTP binding protein, beta prime coatomer protein complex subunit, GPCR, beta-transducin repeat containing protein, speckle-type POZ protein, adenosine kinase, prefoldin subunit 1, translation initiation factor eIF-4E, Rho GTPase activating protein, histone H4, histone H3, histone H2B, histone H2Av, cleft lip and palate associated transmembrane protein, mitochondrial ribosomal protein s22, ribosomal protein s15a, hypothetical protein 20, START domain containing protein, and filament protein genes, complete cds blastn 40078 566 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina roseola
9453690 9453690 PRJNA556992_P_NODE_196868_length_329_cov_1.441406_g194680_i0 PRJNA556992 196868 329 1.441406 4.74222574 Adineta vaga 104782 Rotifera other_Eukaryota 564 3.2199999999999995e-156   NTclustered gi|259129963|gb|GQ398061.1| 104782 g194680 i0 97.583 4.37689969604863 331 5 100 3 1 329 10066 10395 Adineta vaga 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 1440 564 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
13279498 13279498 PRJNA556992_P_NODE_206391_length_323_cov_22.684000_g204203_i0 PRJNA556992 206391 323 22.684 73.26932 Adineta vaga 104782 Rotifera other_Eukaryota 418 2.6e-112   NTclustered gi|194500447|gb|EU850438.1| 104782 g204203 i0 96.109 75.2229102167183 257 9 98 1 1 256 28069 28325 Adineta vaga hypothetical protein 18 gene, partial cds; hypothetical protein 19, coatomer, GPCR, beta-transducin repeat, speckle-type POZ, adenosine kinase, prefoldin subunit, translation initiation factor eIF-4E, rho GTPase activating protein, histone H4, histone H3, histone H2B, and histone H2Av genes, complete cds; and mitochondrial ribosomal protein s22 gene, partial cds blastn 24297 418 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
13281553 13281553 PRJNA556992_P_NODE_345611_length_282_cov_12.679426_g343422_i0 PRJNA556992 345611 282 12.679426 35.75598132 Adineta vaga 104782 Rotifera other_Eukaryota 409 1.34e-109   NTclustered gi|194500447|gb|EU850438.1| 104782 g343422 i0 92.908 17.6560283687943 282 18 100 2 1 282 26314 26035 Adineta vaga hypothetical protein 18 gene, partial cds; hypothetical protein 19, coatomer, GPCR, beta-transducin repeat, speckle-type POZ, adenosine kinase, prefoldin subunit, translation initiation factor eIF-4E, rho GTPase activating protein, histone H4, histone H3, histone H2B, and histone H2Av genes, complete cds; and mitochondrial ribosomal protein s22 gene, partial cds blastn 4979 409 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
14557683 14557683 PRJNA556992_P_NODE_436212_length_273_cov_1.590000_g434023_i0 PRJNA556992 436212 273 1.59 4.3407 Adineta vaga complex sp. B JFF-2016 1813165 Rotifera other_Eukaryota 460 3.5099999999999996e-125   NTclustered gi|1005055631|gb|KU860774.1| 1813165 g434023 i0 97.07 64.7619047619048 273 8 100 0 1 273 2141 1869 Adineta vaga complex sp. B JFF-2016 isolate H158a 28S ribosomal RNA gene, partial sequence blastn 17680 460 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga complex sp. B JFF-2016
17106089 17106089 PRJNA556992_P_NODE_41054_length_553_cov_23.991667_g38908_i0 PRJNA556992 41054 553 23.991667 132.67391851 Philodina roseola 96448 Rotifera other_Eukaryota 617 4.279999999999999e-172   NTclustered gi|197321819|gb|EU853695.1| 96448 g38908 i0 93.917 58.9801084990958 411 22 74 1 18 425 1 411 Philodina roseola histone H2A variant H2Av1 copy 1a (H2Av1) gene, partial cds blastn 32616 617 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina roseola
17107770 17107770 PRJNA556992_P_NODE_54394_length_496_cov_20.576832_g52230_i0 PRJNA556992 54394 496 20.576832 102.06108672 Adineta vaga 104782 Rotifera other_Eukaryota 348 5.52e-91   NTclustered gi|194500463|gb|EU850439.1| 104782 g52230 i0 90.299 51.1532258064516 268 23 100 2 229 496 12961 12697 Adineta vaga dihydrogenpyrimidine dehydrogenase gene, partial cds; and translation initiation factor eIF-4E, rho GTPase activating protein, 7 transmembrane protein 66, histone H4, histone H3, histone H2B, osteopetrosis associated transmembrane protein, cleft lip and palate associated transmembrane, ribosomal protein s15a, and hypothetical protein 20 genes, complete cds blastn 25372 348 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
24754744 24754744 PRJNA556992_P_NODE_42020_length_548_cov_12.202105_g39872_i0 PRJNA556992 42020 548 12.202105 66.8675354 Philodina roseola 96448 Rotifera other_Eukaryota 569 1.1999999999999997e-157   NTclustered gi|197321821|gb|EU853696.1| 96448 g39872 i0 94.565 59.3613138686131 368 20 67 0 14 381 1 368 Philodina roseola histone H2A variant H2Av1 copy 1b (H2Av1) gene, partial cds blastn 32530 569 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina roseola
24757904 24757904 PRJNA556992_P_NODE_682440_length_252_cov_2.731844_g680251_i0 PRJNA556992 682440 252 2.731844 6.88424688 Adineta vaga 104782 Rotifera other_Eukaryota 339 1.57e-88   NTclustered gi|197321801|gb|EU853686.1| 104782 g680251 i0 91.77 15.9206349206349 243 20 96 0 1 243 276 518 Adineta vaga histone H2A variant H2Abd copy 1 (H2Abd) gene, partial cds blastn 4012 339 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
24759105 24759105 PRJNA556992_P_NODE_77700_length_438_cov_12.528767_g75521_i0 PRJNA556992 77700 438 12.528767 54.87599946 Philodina roseola 96448 Rotifera other_Eukaryota 518 3.47e-142   NTclustered gi|187936070|gb|EU652317.1| 96448 g75521 i0 91.892 174.956621004566 370 30 84 0 68 437 20695 20326 Philodina roseola GTP binding protein, beta prime coatomer protein complex subunit, GPCR, beta-transducin repeat containing protein, speckle-type POZ protein, adenosine kinase, prefoldin subunit 1, translation initiation factor eIF-4E, Rho GTPase activating protein, histone H4, histone H3, histone H2B, histone H2Av, cleft lip and palate associated transmembrane protein, mitochondrial ribosomal protein s22, ribosomal protein s15a, hypothetical protein 20, START domain containing protein, and filament protein genes, complete cds blastn 76631 518 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina roseola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;