RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA556992" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA556992 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5631663 5631663 PRJNA556992_P_NODE_36245_length_582_cov_2.750491_g34117_i0 PRJNA556992 36245 582 2.750491 16.00785762 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 1059 0   NTclustered gi|1124902734|gb|AY812498.2| 6182 g34117 i0 99.485 99.893470790378 583 2 100 1 1 582 1521 939 Schistosoma japonicum SJCHGC01615 protein mRNA, partial cds blastn 58138 1059 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
6906818 6906818 PRJNA556992_P_NODE_450346_length_271_cov_13.464646_g448157_i0 PRJNA556992 450346 271 13.464646 36.48919066 Dicrocoelium dendriticum 57078 Platyhelminthes Platyhelminthes 62.1 4.13e-5   NTclustered gi|687328761|emb|LK788226.1| 57078 g448157 i0 87.037 0.199261992619926 54 7 20 0 163 216 246 193 Dicrocoelium dendriticum genome assembly D_dendriticum_Leon_v1_0_4, scaffold DDEL_contig0041535 blastn 54 62.1 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Dicrocoeliidae Dicrocoelium Dicrocoelium dendriticum
8186969 8186969 PRJNA556992_P_NODE_86927_length_423_cov_2.217143_g84746_i0 PRJNA556992 86927 423 2.217143 9.37851489 Macrostomum tuba 52054 Platyhelminthes Platyhelminthes 776 0   NTclustered gi|261873755|gb|FJ715320.1| 52054 g84746 i0 99.764 100.643026004728 424 0 100 1 1 423 826 403 Macrostomum tuba voucher MTP LS 261 28S large subunit ribosomal RNA gene, partial sequence blastn 42572 776 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Macrostomida Macrostomidae Macrostomum Macrostomum tuba
9458009 9458009 PRJNA556992_P_NODE_500968_length_267_cov_2.025773_g498779_i0 PRJNA556992 500968 267 2.025773 5.40881391 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 56.5 0.002   NTclustered gi|690470899|emb|LN010132.1| 99802 g498779 i0 97.059 1.60674157303371 34 0 13 1 100 133 9415 9447 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_scaffold0010011 blastn 429 56.5 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
17099624 17099624 PRJNA556992_P_NODE_1020794_length_228_cov_3.832258_g1018604_i0 PRJNA556992 1020794 228 3.832258 8.73754824 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 54.7 0.006   NTclustered gi|690854748|emb|LN354511.1| 99802 g1018604 i0 100 0.12719298245614 29 0 13 0 145 173 137 165 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_contig0124665 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
21528892 21528892 PRJNA556992_P_NODE_603077_length_258_cov_4.816216_g600888_i0 PRJNA556992 603077 258 4.816216 12.42583728 Stenostomum 39238 Platyhelminthes Platyhelminthes 472 1.52e-128   NTclustered gi|209968685|gb|FJ384848.1| 52061 g600888 i0 99.612 59.9302325581395 258 1 100 0 1 258 852 595 Stenostomum leucops isolate K04_75 28S ribosomal RNA gene, partial sequence blastn 15462 472 1 Eukaryota Opisthokonta Metazoa Platyhelminthes     Stenostomidae Stenostomum Stenostomum leucops
23484615 23484615 PRJNA556992_P_NODE_723139_length_250_cov_0.870056_g720950_i0 PRJNA556992 723139 250 0.870056 2.17514 Stenostomum sp. 'longpit' 570257 Platyhelminthes Platyhelminthes 307 4.3800000000000005e-79   NTclustered gi|209968695|gb|FJ384858.1| 570257 g720950 i0 89.157 28.156 249 23 99 3 3 250 772 527 Stenostomum sp. 'longpit' isolate K05_02 28S ribosomal RNA gene, partial sequence blastn 7039 307 1 Eukaryota Opisthokonta Metazoa Platyhelminthes     Stenostomidae Stenostomum Stenostomum sp. 'longpit'

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;