RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA556992" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA556992 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
527375 527375 PRJNA556992_P_NODE_334081_length_284_cov_1.715640_g331892_i0 PRJNA556992 334081 284 1.71564 4.8724176 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 52.8 0.026   NTclustered gi|2319646654|ref|XM_001321867.2| 412133 g331892 i0 100 0.197183098591549 28 0 10 0 2 29 1636 1663 Trichomonas vaginalis G3 spectrin binding (TVAGG3_0311940), partial mRNA blastn 56 52.8 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
9459811 9459811 PRJNA556992_P_NODE_649708_length_255_cov_1.565934_g647519_i0 PRJNA556992 649708 255 1.565934 3.9931317 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 455 1.51e-123   NTclustered gi|2319615589|ref|XR_007835968.1| 412133 g647519 i0 98.824 76.8941176470588 255 3 100 0 1 255 2160 2414 Trichomonas vaginalis G3 23S ribosomal RNA (TVAGG3_0033920), rRNA blastn 19608 455 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
15828142 15828142 PRJNA556992_P_NODE_199433_length_327_cov_3.783465_g197245_i0 PRJNA556992 199433 327 3.783465 12.37193055 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 56.5 0.002   NTclustered gi|2794861155|ref|XM_067921658.1| 135588 g197245 i0 100 0.0917431192660551 30 0 9 0 218 247 1016 1045 Histomonas meleagridis Ubiquitin-like modifier-activating enzyme 1 (GO595_000811), partial mRNA blastn 30 56.5 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;