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contig_metadata

15 rows where analysis = "blastn", bioproject = "PRJNA556992" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 15 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA556992 · 15 ✖

analysis 1

  • blastn · 15 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3074976 3074976 PRJNA556992_P_NODE_125143_length_378_cov_5.554098_g122956_i0 PRJNA556992 125143 378 5.554098 20.99449044 Caenorhabditis briggsae 6238 Nematoda Nematoda 52.8 0.036   NTclustered gi|2158436204|ref|XM_045240039.1| 6238 g122956 i0 100 0.0740740740740741 28 0 7 0 5 32 1803 1776 Caenorhabditis briggsae Protein CBG27839 (CBG27839), partial mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
5630407 5630407 PRJNA556992_P_NODE_277045_length_294_cov_1.832579_g274856_i0 PRJNA556992 277045 294 1.832579 5.38778226 Oscheius dolichura 473156 Nematoda Nematoda 544 3.69e-150   NTclustered gi|300379472|gb|HM355811.1| 473156 g274856 i0 100 62.3503401360544 294 0 100 0 1 294 2633 2926 Oscheius dolichura isolate LDY30 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 18331 544 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Oscheius Oscheius dolichura
6229115 6229115 PRJNA556992_P_NODE_220305_length_316_cov_4.707819_g218117_i0 PRJNA556992 220305 316 4.707819 14.87670804 Caenorhabditis 6237 Nematoda Nematoda 584 2.359999999999999e-162   NTclustered gi|2500298834|gb|OQ921601.1| 6238 g218117 i0 100 100.914556962025 316 0 100 0 1 316 377 62 Caenorhabditis briggsae strain CFB270 small subunit ribosomal RNA gene, partial sequence blastn 31889 584 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
9453774 9453774 PRJNA556992_P_NODE_201708_length_326_cov_2.525692_g199520_i0 PRJNA556992 201708 326 2.525692 8.23375592 Meloidogyne incognita 6306 Nematoda Nematoda 555 1.9199999999999994e-153   NTclustered gi|18147017|dbj|AB047764.1| 6306 g199520 i0 97.531 50.6748466257669 324 8 99 0 1 324 972 649 Meloidogyne incognita DNA, polymorphic marker for virulence, isolate:MIGD-VI blastn 16520 555 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne incognita
12010352 12010352 PRJNA556992_P_NODE_65830_length_464_cov_0.923274_g63658_i0 PRJNA556992 65830 464 0.923274 4.28399136 Strongyloides ratti 34506 Nematoda Nematoda 52.8 0.045   NTclustered gi|1376136953|ref|XM_024648592.1| 34506 g63658 i0 100 0.0603448275862069 28 0 6 0 94 121 1530 1503 Strongyloides ratti Hypothetical protein (SRAE_1000161400), partial mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
13879168 13879168 PRJNA556992_P_NODE_17451_length_807_cov_1.713896_g15618_i0 PRJNA556992 17451 807 1.713896 13.83114072 Metazoa 33208 Nematoda Nematoda 1469 0   NTclustered gi|158821895|gb|EU195959.1| 479134 g15618 i0 99.504 84.0483271375465 807 2 100 2 1 807 1546 2350 Diploscapter sp. JU359 28S ribosomal RNA gene, partial sequence blastn 67827 1480 0.992567567567568 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter sp. JU359
15152962 15152962 PRJNA556992_P_NODE_123492_length_380_cov_2.208469_g121305_i0 PRJNA556992 123492 380 2.208469 8.3921822 Metazoa 33208 Nematoda Nematoda 697 0   NTclustered gi|158821895|gb|EU195959.1| 479134 g121305 i0 99.737 76.8631578947368 380 1 100 0 1 380 990 611 Diploscapter sp. JU359 28S ribosomal RNA gene, partial sequence blastn 29208 697 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter sp. JU359
17111493 17111493 PRJNA556992_P_NODE_842714_length_244_cov_0.877193_g840524_i0 PRJNA556992 842714 244 0.877193 2.14035092 Trichinella spiralis 6334 Nematoda Nematoda 56.5 0.002   NTclustered gi|145279689|gb|AC189672.3| 6334 g840524 i0 100 0.122950819672131 30 0 12 0 115 144 47281 47310 Trichinella spiralis BAC clone TS195-18H12 from chromosome unknown, complete sequence blastn 30 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
19652717 19652717 PRJNA556992_P_NODE_265136_length_298_cov_3.795556_g262947_i0 PRJNA556992 265136 298 3.795556 11.31075688 Plectus minimus 446301 Nematoda Nematoda 399 8.589999999999998e-107   NTclustered gi|148614851|gb|EF417148.1| 446301 g262947 i0 90.97 23.3825503355705 299 24 100 3 1 298 406 702 Plectus minimus large subunit ribosomal RNA gene, partial sequence blastn 6968 399 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Plectida Plectidae Plectus Plectus minimus
19655419 19655419 PRJNA556992_P_NODE_46936_length_525_cov_2.789823_g44778_i0 PRJNA556992 46936 525 2.789823 14.64657075 Strongyloides ratti 34506 Nematoda Nematoda 381 5.779999999999999e-101   NTclustered gi|1376154927|ref|XM_024651418.1| 34506 g44778 i0 83.831 96.6685714285714 402 63 76 2 48 448 1 401 Strongyloides ratti Histone H3 (SRAE_X000165500), partial mRNA blastn 50751 381 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
19658982 19658982 PRJNA556992_P_NODE_756516_length_248_cov_2.034286_g754327_i0 PRJNA556992 756516 248 2.034286 5.04502928 Strongyloides ratti 34506 Nematoda Nematoda 89.8 1.71e-13   NTclustered gi|1376152387|ref|XM_024644732.1| 34506 g754327 i0 92.063 0.520161290322581 63 5 25 0 31 93 297 359 Strongyloides ratti Peptidyl-prolyl cis-trans isomerase B (SRAE_X000039200), partial mRNA blastn 129 89.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
20931910 20931910 PRJNA556992_P_NODE_532137_length_264_cov_3.178010_g529948_i0 PRJNA556992 532137 264 3.17801 8.3899464 Necator americanus 51031 Nematoda Nematoda 54.7 0.007   NTclustered gi|2707546240|ref|XM_064179716.1| 51031 g529948 i0 85.185 0.409090909090909 54 6 20 2 208 260 1816 1868 Necator americanus uncharacterized protein (RB195_006559), partial mRNA blastn 108 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus
23479098 23479098 PRJNA556992_P_NODE_289799_length_290_cov_3.152074_g287610_i0 PRJNA556992 289799 290 3.152074 9.1410146 Meloidogyne arenaria 6304 Nematoda Nematoda 503 6.17e-138   NTclustered gi|18147020|dbj|AB047767.1| 6304 g287610 i0 97.931 25.3551724137931 290 6 100 0 1 290 1275 986 Meloidogyne arenaria DNA, polymorphic marker for virulence, isolate:MAMG-AV blastn 7353 503 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne arenaria
23480242 23480242 PRJNA556992_P_NODE_371619_length_279_cov_6.242718_g369430_i0 PRJNA556992 371619 279 6.242718 17.41718322 Caenorhabditis briggsae 6238 Nematoda Nematoda 510 3.5299999999999996e-140   NTclustered gi|11094896|gb|AC084446.1|AC084446 6238 g369430 i0 99.642 19.3333333333333 279 1 100 0 1 279 16497 16219 Caenorhabditis briggsae cosmid CB018G16, complete sequence blastn 5394 510 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
24754113 24754113 PRJNA556992_P_NODE_371120_length_280_cov_1.053140_g368931_i0 PRJNA556992 371120 280 1.05314 2.948792 Bursaphelenchus kiyoharai 913098 Nematoda Nematoda 100 9.08e-17   NTclustered gi|354681840|dbj|AB597253.1| 913098 g368931 i0 83.186 20.5142857142857 113 16 40 3 158 269 962 852 Bursaphelenchus sp. NK-2010b gene for 18S ribosomal RNA, partial sequence, strain: NK221 blastn 5744 100 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus kiyoharai

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;