RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA556992" and tax_phylum = "Microsporidia"

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tax_superkingdom 1

tax_phylum 1

  • Microsporidia · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA556992 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18383488 18383488 PRJNA556992_P_NODE_67055_length_461_cov_1.432990_g64882_i0 PRJNA556992 67055 461 1.43299 6.6060839 Heterosporis sp. NBDP-2013a 1289055 Fungi Fungi 75 9.55e-9   NTclustered gi|448278458|gb|KC137554.1| 1289055 g64882 i0 95.652 0.0997830802603037 46 2 10 0 14 59 2962 2917 Heterosporis sp. NBDP-2013a isolate MN/CISCO small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 46 75 1 Eukaryota Opisthokonta Fungi Microsporidia     Pleistophoridae Heterosporis Heterosporis sp. NBDP-2013a
24748014 24748014 PRJNA556992_P_NODE_1000020_length_230_cov_4.687898_g997830_i0 PRJNA556992 1000020 230 4.687898 10.7821654 Nematocida ausubeli 1913371 Fungi Fungi 152 1.97e-32   NTclustered gi|2432061457|ref|XR_008288892.1| 1913371 g997830 i0 79.487 2.04347826086957 234 33 97 14 7 230 1169 1397 Nematocida ausubeli 28S ribosomal RNA (NESG_02472), partial rRNA blastn 470 152 1 Eukaryota Opisthokonta Fungi Microsporidia       Nematocida Nematocida ausubeli

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;