RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA556992" and tax_phylum = "Lentisphaerota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA556992 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13278834 13278834 PRJNA556992_P_NODE_166691_length_347_cov_1.120438_g164503_i0 PRJNA556992 166691 347 1.120438 3.88791986 Lentisphaeria bacterium 2053569 Bacteria Bacteria 385 2.85e-102   NTclustered gi|2189495548|gb|CP091727.1| 2053569 g164503 i0 86.819 148.893371757925 349 41 99 5 1 346 950804 950458 MAG: Lentisphaeria bacterium isolate nC33_lr_bin.207.fa chromosome blastn 51666 385 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium
20937528 20937528 PRJNA556992_P_NODE_984737_length_232_cov_2.861635_g982547_i0 PRJNA556992 984737 232 2.861635 6.6389932 Lentisphaeria bacterium 2053569 Bacteria Bacteria 143 1.2e-29   NTclustered gi|2189495548|gb|CP091727.1| 2053569 g982547 i0 78.298 13.948275862069 235 42 100 9 1 232 950883 950655 MAG: Lentisphaeria bacterium isolate nC33_lr_bin.207.fa chromosome blastn 3236 143 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;