RNAquarium Metadata Server
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contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJNA556992" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 11 ✖

tax_clade 1

bioproject 1

  • PRJNA556992 · 11 ✖

analysis 1

  • blastn · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1808338 1808338 PRJNA556992_P_NODE_764402_length_248_cov_0.880000_g762213_i0 PRJNA556992 764402 248 0.88 2.1824 Macbrideola oblonga 410620 Evosea other_Eukaryota 56.5 0.002   NTclustered gi|118577476|gb|DQ903682.1| 410620 g762213 i0 96.97 0.245967741935484 33 1 13 0 216 248 2389 2421 Macbrideola oblonga voucher M. Schnittler small subunit ribosomal RNA gene, partial sequence blastn 61 56.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Stemonitida   Macbrideola Macbrideola oblonga
6227976 6227976 PRJNA556992_P_NODE_1042525_length_226_cov_3.019608_g1040335_i0 PRJNA556992 1042525 226 3.019608 6.82431408 Phalansterium 136498 Evosea other_Eukaryota 87.9 5.51e-13   NTclustered gi|300078500|gb|GU001162.1| 136499 g1040335 i0 96.226 374.778761061947 53 2 42 0 1 53 3611 3559 Phalansterium solitarium 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 84700 87.9 1 Eukaryota Amoebozoa   Evosea Variosea     Phalansterium Phalansterium solitarium
6231569 6231569 PRJNA556992_P_NODE_895985_length_241_cov_0.916667_g893795_i0 PRJNA556992 895985 241 0.916667 2.20916747 Stemonitidae 137615 Evosea other_Eukaryota 446 8.519999999999999e-121   NTclustered gi|5712220|gb|AF093247.1|AF093247 101284 g893795 i0 100 77.2448132780083 241 0 100 0 1 241 255 495 Hyperamoeba sp. ATCC50750 small subunit ribosomal RNA gene, complete sequence blastn 18616 446 1 Eukaryota Amoebozoa   Evosea Eumycetozoa     Hyperamoeba Hyperamoeba sp. ATCC50750
7504764 7504764 PRJNA556992_P_NODE_550026_length_263_cov_1.610526_g547837_i0 PRJNA556992 550026 263 1.610526 4.23568338 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 54.7 0.007   NTclustered gi|66812543|ref|XM_635359.1| 352472 g547837 i0 90.476 0.269961977186312 42 2 16 2 29 69 453 493 Dictyostelium discoideum AX4 WD40 repeat-containing protein (DDB_G0281839) mRNA, complete cds blastn 71 54.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
8177108 8177108 PRJNA556992_P_NODE_136147_length_369_cov_1.402027_g133960_i0 PRJNA556992 136147 369 1.402027 5.17347963 Entamoeba moshkovskii 41668 Evosea other_Eukaryota 82.4 4.47e-11   NTclustered gi|148923319|gb|EF421373.1| 41668 g133960 i0 92.857 0.151761517615176 56 4 15 0 228 283 223 278 Entamoeba moshkovskii strain GAH tRNA array unit GAHNK1 genomic sequence blastn 56 82.4 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba moshkovskii
15829611 15829611 PRJNA556992_P_NODE_296533_length_289_cov_2.495370_g294344_i0 PRJNA556992 296533 289 2.49537 7.2116193 Dictyostelium discoideum 44689 Evosea other_Eukaryota 198 3.25e-46   NTclustered gi|66807078|ref|XM_632170.1| 352472 g294344 i0 79.298 6.44636678200692 285 57 98 2 6 289 1144 1427 Dictyostelium discoideum AX4 DEAD/DEAH box helicase (ddx41) mRNA, complete cds blastn 1863 198 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
18377521 18377521 PRJNA556992_P_NODE_224515_length_314_cov_3.726141_g222327_i0 PRJNA556992 224515 314 3.726141 11.70008274 Echinostelium bisporum 1973072 Evosea other_Eukaryota 472 1.9e-128   NTclustered gi|1465309735|gb|MH809395.1| 1973072 g222327 i0 93.949 58.031847133758 314 15 99 3 2 314 477 167 Echinostelium bisporum isolate Nx14-A1 small subunit ribosomal RNA gene, partial sequence blastn 18222 472 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Echinosteliales Echinosteliidae Echinostelium Echinostelium bisporum
18378994 18378994 PRJNA556992_P_NODE_322875_length_285_cov_4.400943_g320686_i0 PRJNA556992 322875 285 4.400943 12.54268755 Dictyostelium discoideum 44689 Evosea other_Eukaryota 97.1 1.2e-15   NTclustered gi|19172041|gb|AF474342.1| 44689 g320686 i0 89.873 6.68421052631579 79 3 26 5 105 179 8180 8103 Dictyostelium discoideum ABC transporter ABCC.10 (abcC10) gene, complete cds blastn 1905 97.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
20935404 20935404 PRJNA556992_P_NODE_812617_length_245_cov_2.308140_g810427_i0 PRJNA556992 812617 245 2.30814 5.654943 Heterostelium album 2086695 Evosea other_Eukaryota 67.6 7.9e-7   NTclustered gi|1160572636|ref|XM_020576496.1| 670386 g810427 i0 97.436 0.697959183673469 39 1 16 0 81 119 1389 1427 Polysphondylium pallidum PN500 hypothetical protein partial mRNA blastn 171 67.6 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
20937364 20937364 PRJNA556992_P_NODE_970557_length_233_cov_5.143750_g968367_i0 PRJNA556992 970557 233 5.14375 11.9849375 Didymium spongiosum 289992 Evosea other_Eukaryota 176 1.19e-39   NTclustered gi|2161226356|gb|MZ313554.1| 289992 g968367 i0 82.547 11.1158798283262 212 26 90 8 1 210 7228 7026 Mucilago crustacea 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 2590 176 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium spongiosum
21527950 21527950 PRJNA556992_P_NODE_342737_length_283_cov_1.466667_g340548_i0 PRJNA556992 342737 283 1.466667 4.15066761 Physarum 5790 Evosea other_Eukaryota 501 2.1599999999999998e-137   NTclustered gi|1275019482|gb|MG429806.1| 2052661 g340548 i0 98.587 93.6996466431095 283 4 100 0 1 283 205 487 Physaraceae sp. isolate s40262/1 small subunit ribosomal RNA gene, partial sequence blastn 26517 501 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae   Physaraceae sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;