RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA556992" and tax_phylum = "Cossaviricota"

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tax_superkingdom 1

tax_phylum 1

  • Cossaviricota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA556992 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4350022 4350022 PRJNA556992_P_NODE_1087004_length_216_cov_4.097902_g1084813_i0 PRJNA556992 1087004 216 4.097902 8.85146832 Gammapapillomavirus 8 1175850 Viruses Viruses 372 1.29e-98   NTclustered gi|343411609|gb|HM999999.1| 1070420 g1084813 i0 97.685 1 216 5 100 0 1 216 3666 3451 Human papillomavirus type 147 isolate GH659, complete genome blastn 216 372 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Gammapapillomavirus Gammapapillomavirus 8
4354503 4354503 PRJNA556992_P_NODE_329244_length_285_cov_1.132075_g327055_i0 PRJNA556992 329244 285 1.132075 3.22641375 Alphapapillomavirus 2 337039 Viruses Viruses 510 3.61e-140   NTclustered gi|58430757|dbj|AB201226.1| 260717 g327055 i0 98.947 12.4771929824561 285 3 100 0 1 285 2295 2011 Human papillomavirus type 94 DNA, nearly complete genome, Korean variant blastn 3556 510 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Alphapapillomavirus Alphapapillomavirus 2
10737229 10737229 PRJNA556992_P_NODE_788169_length_246_cov_4.208092_g785979_i0 PRJNA556992 788169 246 4.208092 10.35190632 Betapapillomavirus 2 333924 Viruses Viruses 433 6.79e-117   NTclustered gi|1273499042|gb|MF588683.1| 333924 g785979 i0 98.374 2 246 4 100 0 1 246 4744 4499 Betapapillomavirus 2 isolate Beta02_m292c88, complete genome blastn 492 433 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Betapapillomavirus Betapapillomavirus 2
12006821 12006821 PRJNA556992_P_NODE_374410_length_279_cov_2.398058_g372221_i0 PRJNA556992 374410 279 2.398058 6.69058182 Betapapillomavirus 1 337051 Viruses Viruses 503 5.9e-138   NTclustered gi|1273498994|gb|MF588677.1| 337051 g372221 i0 99.281 2.89964157706093 278 2 99 0 1 278 5312 5589 Betapapillomavirus 1 isolate Beta01_HIVGc36, complete genome blastn 809 503 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Betapapillomavirus Betapapillomavirus 1
13287639 13287639 PRJNA556992_P_NODE_829451_length_244_cov_2.883041_g827261_i0 PRJNA556992 829451 244 2.883041 7.03462004 Betapapillomavirus 1 337051 Viruses Viruses 56.5 0.002   NTclustered gi|1200175664|gb|KY969593.1| 31547 g827261 i0 100 0.245901639344262 30 0 12 0 23 52 5585 5556 Human papillomavirus 20 strain HPV-20/Lancaster/2015, complete genome blastn 60 56.5 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Betapapillomavirus Betapapillomavirus 1
14557185 14557185 PRJNA556992_P_NODE_396712_length_277_cov_1.446078_g394523_i0 PRJNA556992 396712 277 1.446078 4.00563606 Blatella germanica densoviruses-like virus 1 2776787 Viruses Viruses 490 4.56e-134   NTclustered gi|1917254128|gb|MN851295.1| 2776787 g394523 i0 98.556 30.8736462093863 277 4 100 0 1 277 131 407 Blatella germanica densoviruses-like virus 1 isolate EuB-PV1 nonstructural protein genes, complete cds blastn 8552 490 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Blatella germanica densoviruses-like virus 1
18385995 18385995 PRJNA556992_P_NODE_870755_length_242_cov_2.254438_g868565_i0 PRJNA556992 870755 242 2.254438 5.45573996 Epsilonpolyomavirus bovis 1891754 Viruses Viruses 58.4 4.69e-4   NTclustered gi|954182136|gb|KU170643.1| 1561702 g868565 i0 100 0.128099173553719 31 0 13 0 115 145 138 108 Bovine polyomavirus 1 isolate #7535, complete genome blastn 31 58.4 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Epsilonpolyomavirus Epsilonpolyomavirus bovis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;