RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA556992" and tax_phylum = "Chaetognatha"

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tax_superkingdom 1

tax_phylum 1

  • Chaetognatha · 1 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA556992 · 1 ✖

analysis 1

  • blastn · 1 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24760273 24760273 PRJNA556992_P_NODE_866100_length_242_cov_3.562130_g863910_i0 PRJNA556992 866100 242 3.56213 8.6203546 Parasagitta setosa 366441 Chaetognatha other_Eukaryota 215 2.63e-51   NTclustered gi|158524735|gb|EU074272.1| 366441 g863910 i0 82.716 55.7148760330578 243 40 100 2 1 242 724 965 Sagitta setosa mitochondrial ATP synthase beta subunit mRNA, partial cds; nuclear gene for mitochondrial product blastn 13483 215 1 Eukaryota Opisthokonta Metazoa Chaetognatha Sagittoidea Aphragmophora Sagittidae Parasagitta Parasagitta setosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;