RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA556992" and tax_phylum = "Candidatus Peregrinibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Peregrinibacteriota · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA556992 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12004401 12004401 PRJNA556992_P_NODE_209950_length_322_cov_1.236948_g207762_i0 PRJNA556992 209950 322 1.236948 3.98297256 Candidatus Peribacter riflensis 1735162 Bacteria Bacteria 305 2.1e-78   NTclustered gi|946529367|gb|CP013062.1| 1735162 g207762 i0 91.781 83.0683229813665 219 18 68 0 60 278 1195650 1195432 MAG: Candidatus Peribacter riflensis, complete genome blastn 26748 305 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota Candidatus Peribacteria Candidatus Peribacterales   Candidatus Peribacter Candidatus Peribacter riflensis
13287892 13287892 PRJNA556992_P_NODE_849351_length_243_cov_2.711765_g847161_i0 PRJNA556992 849351 243 2.711765 6.5895889499999996 Candidatus Peribacter riflensis 1735162 Bacteria Bacteria 248 2.6e-61   NTclustered gi|946529367|gb|CP013062.1| 1735162 g847161 i0 85.656 165.925925925926 244 25 99 8 3 243 1195099 1194863 MAG: Candidatus Peribacter riflensis, complete genome blastn 40320 248 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota Candidatus Peribacteria Candidatus Peribacterales   Candidatus Peribacter Candidatus Peribacter riflensis
13288127 13288127 PRJNA556992_P_NODE_868371_length_242_cov_2.757396_g866181_i0 PRJNA556992 868371 242 2.757396 6.67289832 Candidatus Peribacteria bacterium 2053688 Bacteria Bacteria 217 7.3e-52   NTclustered gi|2258833497|gb|CP060226.1| 2053688 g866181 i0 88.701 4.64876033057851 177 20 73 0 40 216 813837 813661 MAG: Candidatus Peribacteria bacterium isolate HK-STAS-PATE-10 chromosome, complete genome blastn 1125 217 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota Candidatus Peribacteria       Candidatus Peribacteria bacterium
18380873 18380873 PRJNA556992_P_NODE_465215_length_270_cov_2.502538_g463026_i0 PRJNA556992 465215 270 2.502538 6.7568526 Candidatus Peribacteria bacterium 2053688 Bacteria Bacteria 113 1.12e-20   NTclustered gi|2258833497|gb|CP060226.1| 2053688 g463026 i0 81.295 0.514814814814815 139 26 51 0 15 153 928971 929109 MAG: Candidatus Peribacteria bacterium isolate HK-STAS-PATE-10 chromosome, complete genome blastn 139 113 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota Candidatus Peribacteria       Candidatus Peribacteria bacterium
22205262 22205262 PRJNA556992_P_NODE_393738_length_277_cov_2.098039_g391549_i0 PRJNA556992 393738 277 2.098039 5.81156803 Candidatus Peribacteria bacterium 2053688 Bacteria Bacteria 226 1.42e-54   NTclustered gi|2258833497|gb|CP060226.1| 2053688 g391549 i0 82.49 1.78339350180505 257 45 93 0 21 277 1016056 1016312 MAG: Candidatus Peribacteria bacterium isolate HK-STAS-PATE-10 chromosome, complete genome blastn 494 226 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota Candidatus Peribacteria       Candidatus Peribacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;