RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA556992" and tax_phylum = "Candidatus Altimarinota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA556992 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4954771 4954771 PRJNA556992_P_NODE_546024_length_263_cov_2.505263_g543835_i0 PRJNA556992 546024 263 2.505263 6.58884169 Bacteria 2 Bacteria Bacteria 200 8.099999999999998e-47   NTclustered gi|1275383184|gb|CP017714.1| 1540872 g543835 i0 81.323 16.0988593155894 257 38 96 6 2 253 839152 839403 Candidatus Gracilibacteria bacterium HOT-871, complete genome blastn 4234 200 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium HOT-871
9455009 9455009 PRJNA556992_P_NODE_281768_length_292_cov_3.269406_g279579_i0 PRJNA556992 281768 292 3.269406 9.54666552 Candidatus Gracilibacteria bacterium HOT-871 1540872 Bacteria Bacteria 169 2.58e-37   NTclustered gi|1275383184|gb|CP017714.1| 1540872 g279579 i0 80.162 0.845890410958904 247 32 81 14 1 237 261005 261244 Candidatus Gracilibacteria bacterium HOT-871, complete genome blastn 247 169 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium HOT-871
22199625 22199625 PRJNA556992_P_NODE_1072998_length_219_cov_4.979452_g1070807_i0 PRJNA556992 1072998 219 4.979452 10.90499988 Candidatus Gracilibacteria bacterium 28_42_T64 1862133 Bacteria Bacteria 95.3 3.17e-15   NTclustered gi|1769783243|gb|CP042461.1| 1862133 g1070807 i0 93.651 0.840182648401826 63 4 29 0 157 219 174068 174130 Candidatus Gracilibacteria bacterium 28_42_T64 chromosome, complete genome blastn 184 95.3 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium 28_42_T64
23483371 23483371 PRJNA556992_P_NODE_622779_length_257_cov_1.902174_g620590_i0 PRJNA556992 622779 257 1.902174 4.88858718 Candidatus Gracilibacteria bacterium 28_42_T64 1862133 Bacteria Bacteria 171 6.189999999999999e-38   NTclustered gi|1769783243|gb|CP042461.1| 1862133 g620590 i0 79.051 0.98443579766537 253 49 98 4 6 256 87124 86874 Candidatus Gracilibacteria bacterium 28_42_T64 chromosome, complete genome blastn 253 171 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium 28_42_T64

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;