RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA556992" and tax_phylum = "Candidatus Absconditibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Absconditibacteriota · 1 ✖

tax_clade 1

bioproject 1

  • PRJNA556992 · 1 ✖

analysis 1

  • blastn · 1 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24749673 24749673 PRJNA556992_P_NODE_1131740_length_205_cov_7.446970_g1129549_i0 PRJNA556992 1131740 205 7.44697 15.2662885 candidate division SR1 bacterium Aalborg_AAW-1 1643353 Bacteria Bacteria 165 2.2e-36   NTclustered gi|821340791|gb|CP011268.1| 1643353 g1129549 i0 83.06 1.19512195121951 183 29 89 2 21 202 201574 201755 Candidate division SR1 bacterium Aalborg_AAW-1 chromosome, complete genome blastn 245 165 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota         candidate division SR1 bacterium Aalborg_AAW-1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;