RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA556992" and tax_phylum = "Caldisericota"

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tax_superkingdom 1

tax_phylum 1

  • Caldisericota · 1 ✖

tax_kingdom 1

bioproject 1

  • PRJNA556992 · 1 ✖

analysis 1

  • blastn · 1 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12607048 12607048 PRJNA556992_P_NODE_958170_length_235_cov_2.253086_g955980_i0 PRJNA556992 958170 235 2.253086 5.2947521 Caldisericum 693074 Bacteria Bacteria 206 1.53e-48   NTclustered gi|381363297|dbj|AP012051.1| 511051 g955980 i0 90 169.774468085106 160 15 68 1 26 185 544430 544588 Caldisericum exile AZM16c01 DNA, complete genome blastn 39897 206 1 Bacteria Caldisericota/Cryosericota group Pseudomonadati Caldisericota Caldisericia Caldisericales Caldisericaceae Caldisericum Caldisericum exile

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;