RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA556992" and tax_phylum = "Blastocladiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA556992 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3080724 3080724 PRJNA556992_P_NODE_522603_length_265_cov_2.385417_g520414_i0 PRJNA556992 522603 265 2.385417 6.32135505 Blastocladiella sp. 2169676 Fungi Fungi 252 2.22e-62   NTclustered gi|1976519919|gb|MN873040.1| 2169676 g520414 i0 85.306 25.1962264150943 245 35 92 1 3 246 29587 29831 Blastocladiella sp. mitochondrion, complete genome blastn 6677 252 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella sp.
13278603 13278603 PRJNA556992_P_NODE_152911_length_356_cov_2.469965_g150723_i0 PRJNA556992 152911 356 2.469965 8.7930754 Catenaria sp. 2420186 Fungi Fungi 632 9.46e-177   NTclustered gi|1866582684|gb|MT730859.1| 2420186 g150723 i0 99.425 72.6657303370787 348 2 98 0 1 348 2839 2492 Catenaria sp. isolate JEL0871 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 25869 632 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Catenariaceae Catenaria Catenaria sp.
14564637 14564637 PRJNA556992_P_NODE_999072_length_230_cov_5.566879_g996882_i0 PRJNA556992 999072 230 5.566879 12.8038217 Blastocladiella sp. 2169676 Fungi Fungi 224 4.11e-54   NTclustered gi|1976519919|gb|MN873040.1| 2169676 g996882 i0 84.513 0.982608695652174 226 35 98 0 1 226 6219 5994 Blastocladiella sp. mitochondrion, complete genome blastn 226 224 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella sp.
23479870 23479870 PRJNA556992_P_NODE_343359_length_283_cov_1.395238_g341170_i0 PRJNA556992 343359 283 1.395238 3.94852354 Allomyces macrogynus 28583 Fungi Fungi 80.5 1.2e-10   NTclustered gi|11467573|ref|NC_001715.1| 28583 g341170 i0 78.74 0.448763250883392 127 22 44 5 159 283 40459 40336 Allomyces macrogynus mitochondrion, complete genome blastn 127 80.5 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Allomyces Allomyces macrogynus
24078837 24078837 PRJNA556992_P_NODE_62559_length_472_cov_2.160401_g60387_i0 PRJNA556992 62559 472 2.160401 10.19709272 Catenariaceae 109872 Fungi Fungi 582 1.3199999999999999e-161   NTclustered gi|1866582512|gb|MT730687.1| 109876 g60387 i0 99.074 59.7224576271186 324 3 69 0 149 472 4603 4280 Catenaria anguillulae isolate JEL0194 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 28189 582 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Catenariaceae Catenaria Catenaria anguillulae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;