RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA556842" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 5 ✖

bioproject 1

  • PRJNA556842 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2399577 2399577 PRJNA556842_P_NODE_5922_length_365_cov_1.746951_g5423_i0 PRJNA556842 5922 365 1.746951 6.37637115 Gammaretrovirus 153135 Viruses Viruses 619 7.569999999999999e-173   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g5423 i0 97.26 90.9095890410959 365 10 100 0 1 365 4264 4628 Moloney murine leukemia virus, complete genome blastn 33182 619 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
3675486 3675486 PRJNA556842_P_NODE_4623_length_432_cov_3.027848_g4127_i0 PRJNA556842 4623 432 3.027848 13.08030336 root 1 Root_unresolved Root_unresolved 590 7.15e-164   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g4127 i0 99.085 76.0231481481482 328 3 76 0 2 329 2923 2596 Moloney murine leukemia virus, complete genome blastn 32842 590 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
12000745 12000745 PRJNA556842_P_NODE_6630_length_336_cov_2.060201_g6127_i0 PRJNA556842 6630 336 2.060201 6.92227536 Gammaretrovirus murleu 3428959 Viruses Viruses 560 4.26e-155   NTclustered gi|18448741|gb|AF462057.1| 11801 g6127 i0 96.726 99.8839285714286 336 11 100 0 1 336 3257 2922 Moloney murine leukemia virus neuropathogenic variant ts1-92b, complete genome blastn 33561 560 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
15824555 15824555 PRJNA556842_P_NODE_6633_length_336_cov_1.799331_g6130_i0 PRJNA556842 6633 336 1.799331 6.04575216 Gammaretrovirus murleu 3428959 Viruses Viruses 566 9.159999999999997e-157   NTclustered gi|18448741|gb|AF462057.1| 11801 g6130 i0 97.024 99.9821428571429 336 10 100 0 1 336 3334 3669 Moloney murine leukemia virus neuropathogenic variant ts1-92b, complete genome blastn 33594 566 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
18373545 18373545 PRJNA556842_P_NODE_14075_length_181_cov_2.493056_g13570_i0 PRJNA556842 14075 181 2.493056 4.51243136 Gammaretrovirus murleu 3428959 Viruses Viruses 324 2.95e-84   NTclustered gi|18448741|gb|AF462057.1| 11801 g13570 i0 98.895 69.7458563535912 181 2 100 0 1 181 3914 4094 Moloney murine leukemia virus neuropathogenic variant ts1-92b, complete genome blastn 12624 324 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;