RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA556842" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA556842 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2399571 2399571 PRJNA556842_P_NODE_1322_length_910_cov_5.419244_g996_i0 PRJNA556842 1322 910 5.419244 49.3151204 Fusobacterium 848 Bacteria Bacteria 1672 0   NTclustered gi|2446175567|gb|CP117964.1| 851 g996 i0 99.89 490.073626373626 908 1 99 0 1 908 997252 996345 Fusobacterium nucleatum strain 2/1/50A chromosome, complete genome blastn 445967 1677 0.997018485390578 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
4952322 4952322 PRJNA556842_P_NODE_7704_length_300_cov_4.961977_g7200_i0 PRJNA556842 7704 300 4.961977 14.885931 Fusobacterium 848 Bacteria Bacteria 555 1.7399999999999995e-153   NTclustered gi|2446175567|gb|CP117964.1| 851 g7200 i0 100 489 300 0 100 0 1 300 1456548 1456847 Fusobacterium nucleatum strain 2/1/50A chromosome, complete genome blastn 146700 555 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
15152222 15152222 PRJNA556842_P_NODE_1892_length_749_cov_3.199438_g1504_i0 PRJNA556842 1892 749 3.199438 23.96379062 Fusobacterium 848 Bacteria Bacteria 1378 0   NTclustered gi|2445153921|gb|CP117797.1| 851 g1504 i0 99.866 490.108144192256 749 1 100 0 1 749 114477 115225 Fusobacterium nucleatum strain FNA chromosome, complete genome blastn 367091 1384 0.995664739884393 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;