RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA554794" and tax_phylum = "Planctomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA554794 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6227178 6227178 PRJNA554794_P_NODE_21145_length_184_cov_0.940741_g17216_i0 PRJNA554794 21145 184 0.940741 1.73096344 Rubinisphaera 1649490 Bacteria Bacteria 167 5.37e-37   NTclustered gi|470488120|ref|NR_076852.1| 119 g17216 i0 84.27 111.396739130435 178 20 97 8 7 184 189 20 Planctomyces brasiliensis strain DSM 5305 23S ribosomal RNA gene, complete sequence blastn 20497 167 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Rubinisphaera Rubinisphaera brasiliensis
9449318 9449318 PRJNA554794_P_NODE_22148_length_172_cov_0.934959_g18219_i0 PRJNA554794 22148 172 0.934959 1.6081294799999999 uncultured Planctomycetaceae bacterium 100233 Bacteria Bacteria 318 1.2899999999999999e-82   NTclustered gi|673538893|gb|KJ611645.1| 100233 g18219 i0 100 101 172 0 100 0 1 172 264 435 Uncultured Planctomycetaceae bacterium clone 40-2_27 16S ribosomal RNA gene, partial sequence blastn 17372 318 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   uncultured Planctomycetaceae bacterium
20923111 20923111 PRJNA554794_P_NODE_23017_length_166_cov_0.752137_g19088_i0 PRJNA554794 23017 166 0.75213699999999994 1.24854742 uncultured Phycisphaerales bacterium 904075 Bacteria Bacteria 248 1.65e-61   NTclustered gi|2874253847|emb|OY969903.1| 904075 g19088 i0 93.902 170.590361445783 164 10 99 0 1 164 1832284 1832447 MAG: uncultured Phycisphaerales bacterium isolate MFD01213.bin.c.1 genome assembly, chromosome: 1 blastn 28318 248 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales     uncultured Phycisphaerales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;