RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA554794" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA554794 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4348026 4348026 PRJNA554794_P_NODE_20704_length_190_cov_1.333333_g16775_i0 PRJNA554794 20704 190 1.333333 2.5333327 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 106 1.24e-18   NTclustered gi|2794903832|ref|XM_067889377.1| 164328 g16775 i0 88.636 1.38421052631579 88 8 46 2 64 150 708 794 Phytophthora ramorum 60S ribosomal protein L4-1 (KRP23_4422), partial mRNA blastn 263 106 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
10051998 10051998 PRJNA554794_P_NODE_23868_length_163_cov_0.894737_g19939_i0 PRJNA554794 23868 163 0.894737 1.45842131 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 78.7 2.24e-10   NTclustered gi|2795032317|ref|XM_067933147.1| 4785 g19939 i0 91.228 1.02453987730061 57 5 35 0 3 59 271 215 Phytophthora cinnamomi inorganic phosphate transporter 1-6 (IUM83_08754), partial mRNA blastn 167 78.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
10725040 10725040 PRJNA554794_P_NODE_12049_length_288_cov_1.154812_g8120_i0 PRJNA554794 12049 288 1.154812 3.32585856 Phytophthora infestans 4787 SAR_Eukaryotes SAR_Eukaryotes 233 8.859999999999999e-57   NTclustered gi|301102094|ref|XM_002900089.1| 403677 g8120 i0 84.848 68.7708333333333 231 35 80 0 28 258 293 63 Phytophthora infestans T30-4 40S ribosomal protein S17, putative (PITG_12745), mRNA blastn 19806 233 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
23473389 23473389 PRJNA554794_P_NODE_23579_length_164_cov_0.878261_g19650_i0 PRJNA554794 23579 164 0.878261 1.44034804 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 71.3 3.78e-8   NTclustered gi|2794916188|ref|XM_067893311.1| 164328 g19650 i0 90.909 0.884146341463415 55 1 32 4 94 145 1017 964 Phytophthora ramorum Heat shock 70 kDa protein (KRP23_7935), partial mRNA blastn 145 71.3 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;