RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA554794" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA554794 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14549995 14549995 PRJNA554794_P_NODE_9632_length_423_cov_5.860963_g2142_i1 PRJNA554794 9632 423 5.860963 24.79187349 Dictyostelium discoideum 44689 Evosea other_Eukaryota 542 1.98e-149   NTclustered gi|66805384|ref|XM_631333.1| 352472 g2142 i1 89.976 96.8841607565012 419 42 99 0 3 421 1124 706 Dictyostelium discoideum AX4 hypothetical protein (act4) mRNA, complete cds blastn 40982 542 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
22197802 22197802 PRJNA554794_P_NODE_20778_length_189_cov_1.207143_g16849_i0 PRJNA554794 20778 189 1.207143 2.28150027 Acytostelium subglobosum 361139 Evosea other_Eukaryota 54.7 0.005   NTclustered gi|831773671|ref|XM_012898527.1| 1410327 g16849 i0 100 0.153439153439153 29 0 15 0 149 177 551 523 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 29 54.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
23473398 23473398 PRJNA554794_P_NODE_4839_length_1058_cov_1.518335_g2115_i0 PRJNA554794 4839 1058 1.518335 16.0639843 Cavenderia fasciculata 261658 Evosea other_Eukaryota 606 1.8299999999999992e-168   NTclustered gi|470260760|ref|XM_004360149.1| 261658 g2115 i0 77.63 54.8412098298677 1055 198 97 23 4 1026 1049 1 Cavenderia fasciculata elongation factor 1 alpha (efaAI), partial mRNA blastn 58022 606 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;