RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA554794" and tax_phylum = "Euglenozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA554794 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
520847 520847 PRJNA554794_P_NODE_10201_length_384_cov_1.820896_g6316_i0 PRJNA554794 10201 384 1.820896 6.99224064 Entosiphon sulcatum 101493 Euglenozoa other_Eukaryota 375 1.9099999999999996e-99   NTclustered gi|226347428|gb|FJ807254.1| 101493 g6316 i0 84.759 78.2682291666667 374 57 97 0 11 384 736 363 Entosiphon sulcatum elongation factor 1 alpha gene, partial cds blastn 30055 375 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemataceae Entosiphon Entosiphon sulcatum
1796486 1796486 PRJNA554794_P_NODE_12562_length_271_cov_1.513514_g8633_i0 PRJNA554794 12562 271 1.513514 4.10162294 Trypanosoma grayi 71804 Euglenozoa other_Eukaryota 137 6.67e-28   NTclustered gi|686639240|ref|XM_009313791.1| 71804 g8633 i0 91.837 0.996309963099631 98 8 36 0 132 229 98 1 Trypanosoma grayi 40S ribosomal protein S30 partial mRNA blastn 270 137 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma grayi
3674875 3674875 PRJNA554794_P_NODE_22783_length_166_cov_1.427350_g18854_i0 PRJNA554794 22783 166 1.42735 2.369401 Leishmania 5658 Euglenozoa other_Eukaryota 117 4.86e-22   NTclustered gi|2794767930|ref|XM_067835946.1| 5663 g18854 i0 93.59 3.25301204819277 78 5 47 0 12 89 1631 1708 Leishmania enriettii uncharacterized protein (CUR178_04235), partial mRNA blastn 540 117 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania enriettii
5624783 5624783 PRJNA554794_P_NODE_23205_length_165_cov_0.879310_g19276_i0 PRJNA554794 23205 165 0.87931 1.4508615 Peranema trichophorum 56466 Euglenozoa other_Eukaryota 250 4.5599999999999996e-62   NTclustered gi|27461806|gb|AY130826.1| 56466 g19276 i0 99.275 1.2969696969697 138 1 84 0 1 138 138 1 Peranema trichophorum voucher Carolina Biol. Supp. Co. (CBS) CE 13-1838 large subunit ribosomal RNA gene, partial sequence blastn 214 250 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemidae Peranema Peranema trichophorum
8173645 8173645 PRJNA554794_P_NODE_14407_length_221_cov_1.296512_g10478_i0 PRJNA554794 14407 221 1.296512 2.86529152 Decastava edaphica 1732396 Euglenozoa other_Eukaryota 171 5.18e-38   NTclustered gi|937541992|gb|KP306757.1| 1732396 g10478 i0 90.076 49.6334841628959 131 13 100 0 91 221 1188 1318 Decastava edaphica strain CCAP 1265/2 clone 20 cytosolic heat shock protein 90 (HSP90) gene, partial cds blastn 10969 171 1 Eukaryota Discoba   Euglenozoa Euglenida     Decastava Decastava edaphica
20923042 20923042 PRJNA554794_P_NODE_10177_length_386_cov_1.617211_g6293_i0 PRJNA554794 10177 386 1.617211 6.24243446 Bodo saltans 75058 Euglenozoa other_Eukaryota 449 1.12e-121   NTclustered gi|300676736|gb|GQ377697.1| 75058 g6293 i0 88.267 97.7772020725389 375 44 97 0 4 378 562 936 Bodo saltans alpha-tubulin-like (Atub) mRNA, partial sequence blastn 37742 449 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;