RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA554794" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA554794 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10725093 10725093 PRJNA554794_P_NODE_21229_length_183_cov_0.820896_g17300_i0 PRJNA554794 21229 183 0.820896 1.50223968 Vannella samoroda 2591203 Discosea other_Eukaryota 233 5.19e-57   NTclustered gi|1768465994|gb|MK992744.1| 2591203 g17300 i0 92.593 96.6010928961749 162 12 89 0 22 183 788 627 Vannella samoroda strain RC CCMAm 0457 clone 2 actin gene, partial cds blastn 17678 233 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella samoroda
24747102 24747102 PRJNA554794_P_NODE_10320_length_376_cov_1.311927_g6431_i0 PRJNA554794 10320 376 1.311927 4.93284552 Ripella tribonemae 2047823 Discosea other_Eukaryota 606 6.089999999999998e-169   NTclustered gi|1269228471|gb|MF683596.1| 2047823 g6431 i0 97.479 92.4148936170213 357 5 94 4 23 376 676 1031 Ripella tribonemae clone 22.1.14 18S ribosomal RNA gene, partial sequence blastn 34748 606 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella tribonemae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;