RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA554794" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA554794 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
520862 520862 PRJNA554794_P_NODE_14281_length_224_cov_0.571429_g10352_i0 PRJNA554794 14281 224 0.571429 1.28000096 Spizellomyces punctatus 109760 Fungi Fungi 152 1.91e-32   NTclustered gi|1027028346|ref|XM_016756817.1| 645134 g10352 i0 80.928 8.05357142857143 194 35 86 2 32 224 1590 1782 Spizellomyces punctatus DAOM BR117 ADP,ATP carrier protein 1, mitochondrial, variant (SPPG_08669), partial mRNA blastn 1804 152 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
22197806 22197806 PRJNA554794_P_NODE_21138_length_184_cov_1.118519_g17209_i0 PRJNA554794 21138 184 1.118519 2.05807496 Polychytrium aggregatum 110093 Fungi Fungi 180 6.9e-41   NTclustered gi|2432131102|ref|XM_053109247.1| 110093 g17209 i0 84.831 0.967391304347826 178 27 97 0 4 181 527 350 Polychytrium aggregatum putative ubiquitin/ribosomal protein S27a fusion protein (BJ171DRAFT_487026), mRNA blastn 178 180 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
24747156 24747156 PRJNA554794_P_NODE_21700_length_177_cov_1.062500_g17771_i0 PRJNA554794 21700 177 1.0625 1.880625 Polychytrium aggregatum 110093 Fungi Fungi 198 1.8199999999999993e-46   NTclustered gi|2432143906|ref|XM_053110665.1| 110093 g17771 i0 88.024 66.4745762711864 167 20 94 0 3 169 36 202 Polychytrium aggregatum cyclophilin-like domain-containing protein (BJ171DRAFT_501438), mRNA blastn 11766 198 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;